genome.fa.s3.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3
Parameters: 2 7 7 80 10 50 1000
Length:  6198200

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  32  of  32  ( 3795 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6103258--6103314	28	2.0	28	100	0	114	31	3	33	31	1.75
6110346--6110565	110	2.0	110	97	0	413	25	18	11	44	1.84
6112416--6112443	2	14.0	2	100	0	56	50	0	0	50	1.00
6114570--6114618	17	2.9	16	80	14	53	51	2	2	44	1.24
6115282--6115311	9	3.3	9	90	0	51	13	0	0	86	0.57
6120447--6120493	2	24.0	2	91	4	78	46	0	2	51	1.13
6120553--6120600	2	24.5	2	95	4	89	50	0	0	50	1.00
6121215--6121252	20	2.0	20	94	5	69	34	0	13	52	1.40
6121398--6121464	28	2.4	27	82	5	80	37	14	5	41	1.71
6125864--6125889	13	2.0	13	100	0	52	53	0	0	46	1.00
6125859--6125891	13	2.4	14	85	15	50	48	0	0	51	1.00
6130840--6130949	36	3.0	37	94	4	197	60	8	11	20	1.57
6140773--6140798	3	8.7	3	100	0	52	69	0	0	30	0.89
6140797--6140828	3	10.7	3	100	0	64	68	0	31	0	0.90
6142921--6142947	5	5.4	5	100	0	54	22	18	22	37	1.95
6144092--6144128	16	2.2	17	90	4	58	54	0	0	45	1.00
6144116--6144169	19	2.7	21	77	16	69	40	0	1	57	1.09
6144132--6144195	25	2.5	25	72	7	58	39	1	1	57	1.17
6144151--6144215	31	2.1	32	91	5	107	46	1	0	52	1.10
6144146--6144353	35	5.9	35	72	15	144	42	3	0	52	1.24
6144152--6144380	72	3.2	71	83	6	277	42	4	0	51	1.27
6150234--6150282	12	4.2	12	77	15	57	63	0	26	10	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6150232--6150281	22	2.2	24	89	7	77	62	0	28	10	1.27
6160007--6160190	27	6.2	27	78	19	197	44	5	32	17	1.73
6160004--6160197	62	3.1	63	96	3	358	43	5	32	18	1.73
6160034--6160197	35	5.1	34	74	25	169	43	5	32	18	1.73
6160132--6160202	27	2.7	30	85	14	79	47	4	30	16	1.66
6161406--6161915	79	6.5	79	94	0	867	26	26	15	31	1.95
6161845--6161990	51	2.8	51	81	7	163	26	22	13	37	1.91
6164048--6164087	20	2.0	20	85	0	53	42	0	0	57	0.98
6164107--6164172	23	2.8	23	81	2	69	45	12	12	30	1.78
6164232--6164258	14	1.9	14	100	0	54	70	0	0	29	0.88
6164223--6164294	36	2.0	36	83	5	92	58	1	1	38	1.15
6165107--6165159	24	2.2	25	81	18	69	24	0	3	71	1.02
6165252--6165300	24	2.0	24	84	7	64	38	0	0	61	0.96
6165584--6165628	21	2.1	21	95	0	81	60	0	0	40	0.97
6165615--6165659	24	1.9	23	86	13	65	37	0	0	62	0.96
6165615--6165660	23	2.0	22	84	12	58	39	0	0	60	0.97
6166743--6166776	16	2.1	17	88	5	52	38	2	0	58	1.13
6173429--6173458	2	15.0	2	100	0	60	50	0	0	50	1.00
6175306--6175348	2	21.5	2	100	0	86	51	0	0	48	1.00
6176125--6176149	2	12.5	2	100	0	50	52	0	0	48	1.00
6180557--6180608	20	2.7	20	84	3	61	50	28	1	19	1.58
6182376--6182425	25	2.0	25	96	0	91	34	12	18	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6183788--6183817	15	2.0	15	93	0	51	50	0	0	50	1.00
6186283--6186330	21	2.3	21	78	7	53	43	0	0	56	0.99
6186394--6186467	23	3.3	22	71	17	62	62	0	1	36	1.04
6186394--6186521	36	3.7	35	81	14	115	57	0	0	41	1.04
6186459--6186518	17	3.4	17	73	8	66	51	0	0	48	1.00
6186434--6186521	36	2.5	35	88	5	124	55	0	0	44	0.99
6186473--6186532	19	3.3	19	73	15	63	55	0	0	45	0.99
6186451--6186581	32	4.1	31	72	17	99	51	0	0	48	1.06
6186564--6186609	15	3.3	14	79	17	51	34	0	0	65	0.93
6186994--6187092	31	3.1	31	78	8	94	42	0	0	57	0.98
6187073--6187134	22	3.1	20	81	11	65	46	0	0	53	1.00
6187078--6187134	20	2.7	21	78	13	64	47	0	0	52	1.00
6192752--6192903	14	10.5	14	67	17	78	26	1	34	36	1.65
6192854--6192924	7	10.3	7	73	19	60	26	1	28	43	1.63
6192824--6192903	21	3.8	20	75	16	74	26	1	33	38	1.64
6192854--6192917	28	2.3	27	84	7	76	28	1	28	42	1.65
6192906--6192972	28	2.4	28	89	0	107	14	2	31	50	1.58
6192914--6192972	21	2.8	22	84	5	61	11	3	32	52	1.54
6192921--6192972	14	3.7	14	72	10	52	11	3	32	51	1.56
6193102--6193138	14	2.7	14	91	4	58	13	8	29	48	1.71
6193151--6193300	7	21.3	7	75	6	124	29	0	28	42	1.61
6193173--6193342	28	6.0	26	74	13	99	26	0	29	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6193256--6193342	14	6.1	14	75	7	61	20	0	29	49	1.49
6193365--6193402	20	1.9	20	100	0	76	10	0	52	36	1.36
6193374--6193409	14	2.6	15	83	16	51	11	0	50	38	1.38
6193643--6193684	20	2.2	19	86	4	57	19	0	19	61	1.34
6193833--6193891	27	2.1	28	84	9	77	22	0	30	47	1.51
6194907--6194959	22	2.5	21	79	11	63	37	11	11	39	1.77
6194907--6194959	21	2.5	22	82	11	67	37	11	11	39	1.77
6197738--6197788	22	2.5	22	81	12	65	45	3	3	47	1.40
6197989--6198055	20	3.3	21	68	19	61	47	2	0	49	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32

The End!