genome.fa.s3.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3
Parameters: 2 7 7 80 10 50 1000
Length:  6198200

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  6  of  32  ( 3795 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661352--661408	26	2.2	26	84	6	71	45	0	0	54	0.99
661435--661463	14	2.0	15	93	6	51	55	0	0	44	0.99
664025--664092	17	4.1	18	74	24	60	41	1	0	57	1.08
663999--664131	56	2.2	59	81	9	146	40	1	0	57	1.13
664048--664131	32	2.7	33	78	7	95	41	1	0	57	1.06
671037--671062	2	13.0	2	100	0	52	0	50	0	50	1.00
671176--671217	2	21.0	2	100	0	84	50	0	0	50	1.00
671999--672062	23	2.7	24	76	9	69	39	3	0	57	1.14
672008--672062	14	3.5	16	76	16	53	36	3	0	60	1.15
674458--674505	21	2.3	21	82	7	62	45	0	2	52	1.12
677735--677864	11	12.4	11	66	25	50	42	0	0	56	1.04
677743--677799	8	7.5	8	70	18	50	42	0	0	57	0.98
677748--677848	18	5.7	18	69	19	61	44	0	0	55	0.99
677772--677850	18	4.6	17	74	22	67	46	0	0	53	1.00
677746--677846	37	2.9	36	84	11	113	44	0	0	55	0.99
677732--677853	48	2.5	46	74	17	113	43	0	0	56	0.99
677772--677862	31	2.7	32	85	10	94	45	1	0	53	1.07
680450--680513	30	2.1	30	82	2	74	54	0	0	45	0.99
681165--681224	22	2.7	22	76	5	68	70	1	6	21	1.20
681608--681661	18	3.3	17	75	19	60	70	0	0	29	0.88
681676--681773	14	7.1	14	71	20	64	45	1	1	52	1.14
682217--682257	2	20.5	2	100	0	82	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682620--682662	16	2.7	16	78	7	52	41	2	4	51	1.35
683339--683397	31	1.9	31	82	6	75	40	1	1	55	1.20
688812--688896	42	2.0	42	95	0	152	22	24	12	40	1.89
691837--691917	4	20.2	4	84	5	83	46	8	1	43	1.42
691848--691900	22	2.4	22	90	0	79	47	13	1	37	1.54
691862--691917	14	4.0	14	90	0	67	50	8	0	41	1.34
691862--691917	18	3.1	18	92	0	85	50	8	0	41	1.34
692204--692255	12	4.4	12	77	20	56	25	0	0	75	0.81
692188--692246	28	2.1	28	81	6	66	32	0	0	67	0.91
692204--692255	23	2.2	24	86	13	81	25	0	0	75	0.81
692702--692726	7	3.6	7	100	0	50	32	28	40	0	1.57
693576--693600	2	12.5	2	100	0	50	48	0	0	52	1.00
694706--694732	7	3.9	7	100	0	54	29	0	0	70	0.88
695637--695673	12	3.2	12	77	14	51	64	0	0	35	0.94
696055--696105	24	2.1	24	85	7	68	84	0	15	0	0.63
696053--696105	8	6.8	8	75	12	56	84	0	15	0	0.61
697197--697231	15	2.2	16	90	5	54	85	2	8	2	0.79
697816--697870	26	2.1	26	83	6	67	50	1	0	47	1.11
698301--698380	28	2.8	28	77	9	81	30	1	3	65	1.18
698394--698448	29	2.0	28	82	13	69	54	1	0	43	1.10
698405--698492	24	3.3	28	68	16	69	51	2	5	40	1.38
699277--699315	19	2.1	19	90	4	62	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700452--700504	24	2.2	24	89	0	79	56	0	0	43	0.99
706321--706409	42	2.1	42	93	0	151	48	17	17	15	1.82
706562--706626	27	2.8	21	72	24	67	41	9	3	46	1.51
707401--707439	2	19.5	2	100	0	78	51	0	0	48	1.00
710449--710475	13	2.1	13	100	0	54	55	0	14	29	1.40
711523--711573	21	2.5	20	81	9	57	39	0	1	58	1.09
711555--711591	15	2.5	14	87	12	56	45	0	5	48	1.25
711919--712028	39	2.9	37	76	10	105	46	2	8	42	1.48
711926--712031	38	2.8	38	74	9	99	47	2	7	42	1.46
714385--714410	8	3.2	8	100	0	52	11	0	0	88	0.52
716153--716343	78	2.5	75	79	11	189	39	3	1	56	1.25
716489--716537	22	2.2	22	89	7	73	57	4	4	34	1.37
716599--716659	29	2.1	29	93	0	104	39	3	1	55	1.26
716615--716675	29	2.1	29	81	6	70	44	3	0	52	1.17
716688--716751	28	2.3	28	81	7	78	39	4	4	51	1.44
717051--717089	20	2.0	20	85	10	53	48	0	0	51	1.00
717124--717161	18	2.0	20	85	10	53	26	0	7	65	1.19
718689--718740	2	25.5	2	92	3	86	48	1	0	50	1.12
718684--718735	25	2.1	25	100	0	104	44	3	0	51	1.19
723301--723334	17	2.1	16	89	10	52	64	0	0	35	0.94
723325--723370	18	2.6	18	79	6	58	54	0	0	45	0.99
723301--723380	18	4.6	18	65	22	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723575--723603	2	14.5	2	100	0	58	48	0	0	51	1.00
724380--724428	20	2.4	20	86	3	62	57	0	2	40	1.10
724434--724471	17	2.2	18	81	13	53	60	0	0	39	0.97
724440--724472	17	1.9	17	93	0	57	60	0	0	39	0.97
724791--724825	16	2.1	17	89	5	54	51	0	0	48	1.00
725209--725277	24	2.8	24	77	16	68	49	1	0	49	1.09
725209--725280	26	2.8	26	74	19	69	48	1	0	50	1.09
725245--725295	24	2.1	24	82	7	59	52	1	3	41	1.31
725322--725383	15	4.2	14	73	17	54	51	3	0	45	1.17
725331--725396	28	2.3	30	78	5	73	54	3	1	40	1.25
726528--726557	16	1.9	16	93	6	53	73	0	3	23	0.98
727423--727491	11	6.3	11	72	22	56	66	0	1	31	1.00
727445--727486	17	2.6	16	85	14	52	69	0	0	30	0.89
730145--730195	20	2.5	21	84	12	70	39	0	0	60	0.97
730757--730824	3	23.3	3	73	21	56	60	0	1	38	1.06
732003--732039	18	2.1	18	89	0	56	48	0	0	51	1.00
732004--732105	50	2.0	51	81	9	120	43	1	0	54	1.11
732438--732486	26	2.0	24	88	8	71	61	0	0	38	0.96
732714--732748	12	2.9	12	86	0	52	68	0	0	31	0.90
732807--732844	17	2.3	17	86	4	51	55	0	10	34	1.34
733264--733316	21	2.6	21	85	11	67	62	0	0	37	0.96
738689--738727	20	2.0	20	84	0	51	56	2	2	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739375--739421	20	2.3	20	85	7	60	42	4	10	42	1.59
740176--740594	209	2.0	209	99	0	820	44	9	6	39	1.62
740769--740802	17	2.0	17	100	0	68	47	11	17	23	1.81
743467--743520	27	1.9	29	82	14	69	42	0	3	53	1.18
743501--743545	21	2.1	22	95	4	83	62	0	0	37	0.96
745581--745687	27	3.9	27	79	10	103	38	0	0	61	0.96
745581--745657	28	2.8	27	86	4	100	40	0	0	59	0.97
745623--745688	18	3.7	18	75	15	57	34	0	0	65	0.93
745579--745673	28	3.4	27	75	13	95	38	0	0	61	0.96
746622--746691	26	2.7	27	72	12	65	47	1	2	48	1.25
747283--747381	30	3.2	30	74	16	85	65	2	2	30	1.15
748320--748370	2	25.5	2	95	0	93	49	1	0	49	1.12
759673--759741	23	3.0	23	87	8	97	53	1	0	44	1.09
759712--759779	5	13.8	5	73	14	61	39	1	0	58	1.07
759974--760011	20	1.9	20	84	10	51	63	0	2	34	1.09
760500--760557	30	2.0	29	86	3	80	43	0	1	55	1.10
760666--760701	2	19.0	2	88	11	58	50	0	0	50	1.00
760669--760701	11	3.0	11	95	0	57	48	0	0	51	1.00
760666--760701	13	2.8	13	91	0	63	50	0	0	50	1.00
768021--768079	12	5.0	12	73	19	61	61	0	1	37	1.07
768020--768052	11	3.0	11	83	16	50	69	0	0	30	0.88
768065--768119	23	2.3	25	81	9	69	52	0	1	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
769153--769203	24	2.1	25	81	3	59	47	5	1	45	1.38
769251--769303	20	2.6	21	77	22	60	56	1	0	41	1.10
775133--775165	16	2.1	16	88	5	50	24	0	0	75	0.80
775492--775540	20	2.5	20	80	6	55	63	0	2	34	1.06
776801--776833	17	1.9	18	88	11	52	69	12	0	18	1.18
777091--777160	9	8.2	9	70	17	51	51	1	0	47	1.09
788800--788878	39	2.0	39	100	0	158	44	0	7	48	1.31
789128--789763	275	2.3	267	78	11	641	47	6	8	37	1.61
790044--790068	2	12.5	2	100	0	50	52	0	0	48	1.00
792318--792358	18	2.3	18	87	4	57	46	0	2	51	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32