Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3
Parameters: 2 7 7 80 10 50 1000
Length:  6198200

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  8  of  32  ( 3795 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
883854--884106
135
1.9
136
95
0
463
31
11
10
46
1.73
884395--884451
17
3.3
16
79
13
60
59
0
0
40
0.97
884779--884819
21
1.9
22
90
5
66
60
9
0
29
1.28
885697--885721
2
12.5
2
100
0
50
52
0
0
48
1.00
886140--886190
25
2.0
25
84
7
66
64
1
1
31
1.15
886172--886217
14
3.1
15
81
9
58
56
2
0
41
1.11
887566--887615
21
2.4
21
83
9
59
46
0
0
54
1.00
887921--887972
18
2.8
18
76
2
50
59
5
0
34
1.21
888967--889000
17
2.1
16
88
5
50
61
0
0
38
0.96
889430--889490
30
2.0
29
84
12
79
63
1
0
34
1.04
889421--889505
29
2.7
33
78
14
106
60
1
0
38
1.05
889447--889494
19
2.4
21
76
13
57
62
2
0
35
1.07
889410--889503
33
3.0
32
78
15
106
62
1
0
36
1.02
889474--889520
23
2.0
25
83
8
62
53
0
2
44
1.12
889554--889586
13
2.4
14
85
10
50
66
0
0
33
0.92
890117--890264
26
5.5
26
73
18
85
54
0
1
44
1.08
890191--890231
19
2.1
19
86
4
55
56
0
0
43
0.99
890324--890376
26
2.0
26
82
7
63
49
0
3
47
1.19
890365--890404
20
2.0
20
90
4
64
50
0
0
50
1.00
890628--890687
25
2.4
25
77
8
59
58
1
0
40
1.08
891852--891922
33
2.2
33
87
5
99
28
2
1
67
1.13
891852--891906
16
3.4
16
76
14
58
25
1
1
70
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
891897--891927
16
2.0
16
93
6
55
35
6
0
58
1.24
893663--893708
17
2.7
17
80
16
51
43
0
0
56
0.99
893847--893887
21
2.1
18
86
13
55
53
0
0
46
1.00
893842--893907
18
3.8
17
70
29
50
53
0
0
46
1.00
896187--896261
34
2.2
35
92
2
125
40
4
16
40
1.67
896325--896371
14
3.4
14
85
5
51
29
2
0
68
1.02
897695--897728
17
1.9
17
88
5
50
58
2
0
38
1.13
899513--899557
20
2.2
21
84
11
58
33
0
2
64
1.06
900276--900323
21
2.2
23
78
14
57
35
2
0
62
1.07
900276--900355
37
2.2
35
81
14
92
38
2
1
57
1.20
900315--900355
20
2.0
20
85
0
55
41
2
2
53
1.27
900346--900385
19
2.1
19
90
0
62
52
7
0
40
1.30
900732--900785
21
2.7
21
83
11
60
38
0
0
61
0.96
900703--900776
25
3.0
25
72
21
75
43
0
0
56
0.99
903702--903736
17
2.0
18
88
5
54
28
0
0
71
0.86
904355--904423
30
2.3
30
80
9
79
36
0
2
60
1.11
905825--905860
3
12.0
3
100
0
72
66
0
0
33
0.92
905859--906019
27
5.9
26
70
21
84
39
1
0
59
1.09
905890--906000
57
1.9
58
82
12
140
41
1
0
56
1.09
905889--906010
12
10.2
12
70
19
69
40
1
0
57
1.08
905931--906020
17
5.4
17
74
12
62
37
1
0
61
1.04
905915--906022
38
2.7
43
75
20
108
39
0
0
59
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
905921--906046
28
4.6
28
74
14
86
38
1
0
59
1.07
907134--907208
18
4.4
17
69
12
64
52
0
0
48
1.00
908652--908731
37
2.1
38
80
13
94
50
0
0
50
1.00
911917--911962
22
2.1
22
84
8
58
50
8
2
39
1.46
914997--915053
8
6.9
8
84
7
51
47
15
0
36
1.46
914998--915052
17
3.2
17
87
7
67
49
14
0
36
1.44
915351--915388
19
2.0
19
89
0
58
28
0
2
68
1.03
915502--915549
9
5.3
9
85
9
62
33
0
12
54
1.38
920031--920106
30
2.5
30
85
8
93
47
0
7
44
1.32
921340--921375
2
18.0
2
94
0
63
50
2
0
47
1.15
922141--922199
16
3.8
16
78
12
61
64
0
1
33
1.04
922276--922306
16
1.9
16
93
0
53
45
0
3
51
1.17
923303--923342
20
2.1
19
90
9
64
47
2
7
42
1.45
924268--924298
16
1.9
16
93
0
53
48
0
0
51
1.00
925829--925872
14
3.1
14
83
6
54
68
2
0
29
1.02
925973--926016
6
7.0
6
80
10
52
77
2
0
20
0.88
925959--926020
26
2.4
26
76
10
72
70
1
0
27
0.96
925957--926018
20
3.1
19
81
13
63
70
1
0
27
0.96
925957--926019
14
4.8
13
76
9
56
71
1
0
26
0.95
925974--926019
12
3.5
13
82
8
58
78
2
0
19
0.86
927129--927187
23
2.5
23
81
8
66
69
5
0
25
1.09
927228--927272
23
2.0
23
90
0
72
68
0
2
28
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
927907--927935
2
14.5
2
100
0
58
51
0
0
48
1.00
928367--928442
3
23.7
3
75
19
57
65
1
3
28
1.18
928349--928432
43
2.0
43
90
0
132
63
1
8
27
1.31
928767--928833
29
2.2
29
80
15
66
50
1
1
46
1.19
928802--928837
16
2.2
17
90
5
56
55
0
0
44
0.99
928802--928837
9
4.3
9
83
16
51
55
0
0
44
0.99
930991--931092
52
2.0
52
98
0
195
30
15
10
43
1.81
933729--934015
88
3.3
88
76
3
283
33
16
12
38
1.85
933772--934018
87
2.8
88
77
1
271
33
15
12
38
1.85
938135--938159
3
8.3
3
100
0
50
32
32
0
36
1.58
940246--940308
33
1.9
33
90
0
99
33
4
4
57
1.41
940338--940370
10
3.0
11
91
8
50
36
9
3
51
1.49
941491--941538
19
2.5
20
83
6
55
75
6
4
14
1.16
942385--942472
32
2.8
31
75
11
83
51
1
0
47
1.08
942407--942456
26
1.9
26
84
8
66
50
0
0
50
1.00
946493--946789
86
3.4
87
74
3
215
32
15
13
37
1.87
947128--947432
155
2.0
155
92
1
513
36
16
13
33
1.88
953160--953222
33
1.9
33
90
0
99
33
4
4
57
1.41
953252--953284
10
3.0
11
91
8
50
36
9
3
51
1.49
954406--954453
19
2.5
20
83
6
55
75
6
4
14
1.16
955300--955387
32
2.8
31
75
11
83
51
1
0
47
1.08
955322--955371
26
1.9
26
84
8
66
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
960045--960105
30
2.0
31
90
3
97
34
16
19
29
1.94
962921--962956
18
2.0
18
100
0
72
38
16
11
33
1.84
968019--968053
3
11.7
3
100
0
70
34
0
0
65
0.93
968996--969058
21
3.1
21
78
10
60
44
0
0
55
0.99
969026--969093
21
3.2
21
77
10
59
52
0
0
47
1.00
969593--969631
18
2.2
18
90
4
62
38
0
0
61
0.96
970448--970498
17
2.9
17
83
11
68
58
0
0
41
0.98
970445--970515
20
3.4
22
78
21
82
57
0
0
42
0.98
971012--971042
11
2.8
11
90
0
53
35
0
0
64
0.94
973194--973228
18
1.9
18
88
0
52
48
5
0
45
1.26
975617--975660
22
2.0
22
82
8
54
34
0
2
63
1.07
976044--976088
15
2.7
16
83
16
56
48
2
0
48
1.13
976060--976113
24
2.3
24
75
6
58
50
1
1
46
1.23
976045--976101
18
3.3
17
78
14
55
49
3
1
45
1.29
980550--980582
2
16.5
2
93
0
57
48
0
3
48
1.17
983098--983141
22
2.0
22
86
0
61
34
0
2
63
1.07
983510--983553
15
2.7
16
86
13
63
50
2
0
47
1.13
985576--985621
17
2.5
20
76
23
55
36
0
0
63
0.95
1025767--1025794
11
2.5
11
100
0
56
64
0
0
35
0.94
1025772--1025799
14
2.0
14
100
0
56
64
0
0
35
0.94
1030339--1030377
2
19.5
2
100
0
78
51
0
0
48
1.00
1036353--1036385
3
11.0
3
100
0
66
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1044150--1044384
121
1.9
121
92
0
389
48
2
3
45
1.34
1044165--1044351
58
3.1
58
66
18
148
48
2
4
45
1.34
1045248--1045279
16
1.9
17
93
6
57
62
0
0
37
0.95
1045516--1045553
2
19.0
2
100
0
76
50
0
0
50
1.00
1048144--1048196
6
8.7
6
80
17
56
39
0
1
58
1.09
1048144--1048196
11
4.3
12
77
17
56
39
0
1
58
1.09
1049078--1049132
25
2.2
25
81
9
69
52
0
0
47
1.00
1049186--1049240
23
2.4
23
79
11
67
40
0
0
60
0.97
1049224--1049275
23
2.2
25
86
10
74
34
1
0
63
1.06
1049987--1050021
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32