genome.fa.s33.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold33
Parameters: 2 7 7 80 10 50 1000
Length:  2032796

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1521 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1925454--1925515	21	3.0	21	84	13	67	61	1	0	37	1.06
1925455--1925507	13	3.9	13	80	9	61	60	0	0	39	0.97
1925941--1925970	2	15.0	2	100	0	60	50	0	50	0	1.00
1926948--1926986	19	2.1	19	90	0	60	28	17	7	46	1.76
1929120--1929151	10	3.4	10	83	16	50	62	0	0	37	0.95
1930322--1930362	21	2.0	21	85	9	57	73	9	0	17	1.09
1931140--1931237	51	1.9	50	84	10	128	51	0	2	46	1.12
1931210--1931277	20	3.2	21	83	12	86	60	0	0	39	0.97
1932395--1932427	17	1.9	17	100	0	66	51	0	0	48	1.00
1935150--1935205	22	2.5	23	97	2	105	62	8	10	17	1.52
1936113--1936187	20	3.8	20	80	3	80	40	12	13	34	1.81
1936110--1936187	40	2.0	39	87	2	111	39	12	12	34	1.82
1936715--1937021	32	9.6	32	94	0	515	15	18	33	31	1.93
1936715--1937173	64	6.9	64	83	10	582	15	18	33	32	1.92
1936715--1937173	96	4.6	96	82	12	584	15	18	33	32	1.92
1936902--1937165	144	1.8	146	95	1	487	15	18	33	32	1.92
1937048--1937173	32	4.0	32	93	3	211	14	17	35	32	1.90
1937048--1937173	63	2.0	63	92	3	209	14	17	35	32	1.90
1937159--1937837	27	24.9	27	91	2	1054	27	14	34	23	1.94
1937159--1937837	82	8.3	81	90	3	1051	27	14	34	23	1.94
1945372--1945427	22	2.5	23	97	2	105	62	8	10	17	1.52
1946335--1946409	20	3.8	20	80	3	80	40	12	13	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1946332--1946409	40	2.0	39	87	2	111	39	12	12	34	1.82
1948515--1948552	19	2.0	19	89	0	58	47	13	0	39	1.42
1950110--1950157	20	2.5	20	86	3	62	75	8	4	12	1.18
1950201--1950239	16	2.5	16	87	4	53	66	12	2	17	1.35
1950655--1950718	30	2.3	27	84	10	83	73	0	0	26	0.84
1950678--1950747	34	2.2	31	82	12	79	67	0	0	32	0.91
1951071--1951112	19	2.2	19	87	8	59	35	0	0	64	0.94
1951137--1951176	18	2.2	18	86	8	55	50	2	2	45	1.28
1951794--1951823	16	1.9	16	93	6	53	26	10	3	60	1.45
1953840--1953901	8	7.8	8	76	18	58	30	0	0	69	0.89
1953833--1953899	17	3.9	17	79	14	68	31	0	0	68	0.90
1953833--1953898	9	7.7	9	77	19	54	31	0	0	68	0.90
1953978--1954054	39	2.0	39	82	10	95	51	2	0	45	1.14
1954164--1954203	18	2.3	18	86	4	55	40	0	0	60	0.97
1954649--1954687	11	3.6	11	86	3	53	0	28	7	64	1.21
1959114--1959159	20	2.2	20	84	3	56	50	0	0	50	1.00
1959303--1959364	19	3.3	19	80	15	76	66	0	0	33	0.92
1967101--1967171	35	2.0	35	94	0	124	39	12	12	35	1.82
1968749--1968804	20	2.8	20	73	24	55	14	8	14	62	1.54
1969925--1970150	78	2.9	77	83	8	223	31	1	11	54	1.47
1969993--1970149	78	2.0	79	93	2	271	33	0	11	54	1.36
1975413--1975493	41	2.0	41	97	0	153	24	18	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1980114--1980158	2	22.5	2	100	0	90	51	0	0	48	1.00
1980579--1980629	13	3.9	13	78	16	61	31	0	0	68	0.90
1980574--1980633	27	2.2	27	100	0	120	28	0	0	71	0.86
1980582--1980633	15	3.7	15	77	15	65	28	0	0	71	0.87
1981149--1981191	2	21.5	2	100	0	86	51	0	0	48	1.00
1981381--1981417	15	2.4	16	86	13	51	59	0	5	35	1.20
1985950--1986003	22	2.5	22	96	3	101	61	9	11	18	1.55
1986916--1986990	20	3.8	20	80	3	80	40	12	13	34	1.81
1986913--1986990	40	2.0	39	87	2	111	39	12	12	34	1.82
1987504--1988904	28	49.6	29	86	6	1379	23	17	31	27	1.97
1987504--1988904	201	7.1	200	84	6	1433	23	17	31	27	1.97
1990238--1990312	36	2.1	36	85	11	102	6	12	9	72	1.29
1992031--1992057	6	4.5	6	100	0	54	55	14	0	29	1.40
1992186--1992298	49	2.3	50	92	1	183	42	15	27	15	1.86
1993852--1993978	53	2.5	50	82	12	150	28	25	14	31	1.95
1993907--1994377	79	6.0	79	93	0	773	26	24	15	33	1.95
1993906--1994377	236	2.0	237	94	0	838	26	24	15	33	1.95
2007751--2008374	60	10.4	60	84	8	761	25	29	19	25	1.99
2007751--2008374	120	5.2	120	86	7	847	25	29	19	25	1.99
2007754--2008304	236	2.3	239	92	4	909	24	29	19	25	1.98
2009063--2009089	6	4.5	6	100	0	54	55	14	0	29	1.40
2009220--2009382	50	3.3	49	92	1	272	42	14	26	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2010934--2011059	52	2.5	50	84	10	157	28	26	13	31	1.94
2010992--2011459	79	5.9	79	92	0	758	26	24	14	33	1.95
2010988--2011459	157	3.0	158	91	2	779	26	24	15	33	1.95
2023845--2023869	1	25.0	1	100	0	50	100	0	0	0	0.00
2024871--2025654	60	12.9	60	87	4	979	25	29	20	25	1.99
2024870--2025654	120	6.4	120	89	4	1096	25	29	20	25	1.99
2024870--2025654	363	2.1	364	91	2	1281	25	29	20	25	1.99
2026359--2026385	12	2.2	12	100	0	54	55	14	0	29	1.40
2026515--2026675	50	3.3	50	85	5	247	42	14	26	15	1.86
2027226--2027325	43	2.5	39	84	12	116	35	39	19	7	1.78
2027255--2027325	18	3.9	18	77	14	74	33	38	21	7	1.80
2028252--2028377	53	2.4	50	81	12	139	29	26	13	30	1.94
2028306--2028775	79	6.0	79	92	0	755	26	24	15	33	1.95
2028596--2028651	28	1.9	28	89	7	85	19	23	21	35	1.96
2028307--2028775	157	3.0	156	92	2	787	26	24	15	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!