genome.fa.s33.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold33
Parameters: 2 7 7 80 10 50 1000
Length:  2032796

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1521 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
910557--910612	19	2.9	19	86	2	76	35	14	17	32	1.90
911157--911258	34	3.0	34	86	0	141	34	19	11	34	1.88
911831--911855	13	1.9	13	100	0	50	36	16	16	32	1.90
911810--911875	32	2.0	33	94	2	116	36	13	12	37	1.82
914684--914732	3	16.7	3	76	19	50	28	0	2	69	1.00
914690--914737	13	3.4	13	76	20	51	27	0	2	70	0.98
914684--914734	11	4.9	11	79	13	63	27	0	1	70	0.98
916936--916974	19	2.0	20	85	10	53	46	30	0	23	1.53
917092--918349	632	2.0	632	97	0	2372	32	15	14	36	1.88
922162--922215	20	2.7	20	100	0	108	22	22	20	35	1.96
922054--922358	164	1.9	164	98	0	592	35	17	18	29	1.93
922345--922371	13	2.1	13	100	0	54	29	14	14	40	1.86
922357--922412	19	2.8	21	86	8	80	33	14	17	33	1.90
922457--922487	13	2.4	13	94	0	53	35	16	12	35	1.87
928416--928456	19	2.2	19	86	8	57	26	0	21	51	1.48
928729--928776	21	2.3	21	79	13	55	35	18	0	45	1.50
929769--929841	20	3.6	20	81	3	101	35	13	19	31	1.91
929787--929862	21	3.7	21	80	3	100	42	11	17	28	1.84
929769--929862	41	2.3	41	98	0	179	39	12	18	29	1.88
929901--929926	13	2.0	13	100	0	52	38	15	15	30	1.88
933986--934016	15	2.1	15	93	0	53	48	16	22	12	1.80
936032--936110	20	3.7	21	75	15	72	26	13	15	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936097--936135	13	3.0	13	96	0	69	30	17	15	35	1.91
938574--938646	20	3.6	20	81	3	101	35	13	19	31	1.91
938592--938667	21	3.7	21	80	3	100	42	11	17	28	1.84
938574--938667	41	2.3	41	98	0	179	39	12	18	29	1.88
938706--938731	13	2.0	13	100	0	52	38	15	15	30	1.88
940472--940523	19	2.5	22	78	18	74	36	1	40	21	1.64
940482--940538	19	3.2	19	82	9	75	35	1	35	28	1.68
941038--941103	20	3.7	20	73	26	83	34	21	15	28	1.93
941059--941117	13	4.0	13	73	26	55	32	18	15	33	1.92
941039--941136	33	3.0	33	93	1	162	32	19	15	32	1.93
941103--941158	19	2.8	21	86	8	80	33	14	17	33	1.90
941103--941240	20	6.8	20	70	18	79	34	15	17	31	1.92
944162--944199	12	3.2	12	92	0	67	63	0	2	34	1.09
944534--944781	128	1.9	129	85	3	347	27	7	20	44	1.78
944808--944860	16	3.2	16	86	2	70	37	11	7	43	1.69
945223--945415	71	2.8	69	79	9	203	37	10	12	39	1.78
946818--946858	20	2.0	20	100	0	82	48	4	14	31	1.65
947317--947352	18	2.0	18	94	0	63	41	25	11	22	1.86
953837--953885	2	24.5	2	95	0	89	48	0	48	2	1.12
959125--959235	55	2.0	55	92	0	186	16	26	23	34	1.95
962283--962337	21	2.6	21	85	5	76	45	14	3	36	1.63
974644--974762	42	2.8	42	92	0	193	8	46	2	42	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974677--974752	12	6.9	11	75	15	52	9	48	2	39	1.49
974668--974753	24	3.8	24	72	17	85	10	45	2	41	1.51
974659--974729	18	3.6	18	69	20	52	9	43	2	43	1.52
977078--977533	45	10.3	45	76	5	394	17	22	16	43	1.88
977096--977535	89	5.0	88	78	6	381	17	23	16	42	1.89
977417--977566	44	3.4	44	80	3	158	20	27	14	38	1.91
978708--979081	156	2.5	153	84	4	472	31	8	6	53	1.56
980253--980292	21	1.9	21	84	0	53	30	2	27	40	1.70
981085--981406	154	2.1	154	84	2	414	24	18	19	37	1.93
984454--984491	13	2.9	13	96	0	67	34	18	15	31	1.92
988714--988784	20	3.6	19	79	7	79	42	12	11	33	1.79
994125--994176	20	2.7	20	93	3	88	28	11	19	40	1.86
994210--994260	20	2.5	20	90	0	75	31	15	13	39	1.87
994248--994272	13	1.9	13	100	0	50	36	16	16	32	1.90
998235--998270	17	2.1	17	89	0	54	27	13	19	38	1.90
1003036--1003164	52	2.5	52	97	0	240	28	18	17	34	1.94
1003173--1003197	13	1.9	13	100	0	50	36	16	16	32	1.90
1003259--1003283	13	1.9	13	100	0	50	32	16	16	36	1.90
1003238--1003303	32	2.0	33	94	2	116	36	16	12	34	1.86
1004036--1004899	49	17.8	49	79	11	883	33	17	25	24	1.96
1004096--1004899	92	8.3	93	84	9	722	33	17	25	24	1.96
1004376--1004912	156	3.6	153	84	8	682	34	16	24	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004052--1004905	444	1.9	435	89	4	1304	33	17	24	24	1.96
1004912--1005048	32	4.2	33	86	4	208	19	16	34	29	1.94
1005123--1005443	31	10.0	31	73	13	121	32	14	33	19	1.92
1005063--1005575	131	3.9	134	80	8	508	31	13	33	20	1.92
1005154--1005575	100	4.2	100	82	7	434	31	14	33	20	1.93
1005487--1006096	31	19.7	31	70	12	219	29	15	29	24	1.96
1005574--1006096	61	8.4	62	76	7	314	30	16	28	24	1.96
1005575--1006097	92	5.6	91	80	6	431	31	16	28	24	1.96
1005650--1006072	64	6.7	64	78	8	395	31	15	28	23	1.96
1005575--1006102	31	16.9	30	71	12	341	31	15	28	24	1.96
1007056--1007110	16	3.5	15	78	11	56	0	9	12	78	0.97
1014328--1014352	13	1.9	13	100	0	50	36	16	16	32	1.90
1014395--1014492	19	5.8	18	71	28	90	36	17	12	33	1.87
1014414--1014470	13	3.9	13	76	24	60	33	17	14	35	1.90
1014393--1014490	32	3.0	32	96	1	178	35	17	12	34	1.87
1015590--1015674	43	2.0	43	81	4	100	30	9	14	45	1.76
1017439--1017488	26	1.9	26	91	0	82	34	8	16	42	1.77
1019125--1019183	31	1.9	31	92	0	100	33	5	28	32	1.79
1020374--1020398	13	1.9	13	100	0	50	32	16	16	36	1.90
1020386--1020438	20	2.6	21	82	8	65	37	16	16	28	1.91
1020488--1020513	13	2.0	13	100	0	52	30	15	15	38	1.88
1020468--1020535	33	2.1	32	89	8	102	33	16	16	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026460--1026490	8	3.8	8	95	4	53	12	0	25	61	1.32
1029098--1029135	20	1.9	19	94	5	67	36	18	10	34	1.85
1029147--1029171	13	1.9	13	100	0	50	32	16	16	36	1.90
1029126--1029193	33	2.1	33	86	5	93	35	17	16	30	1.92
1034466--1034564	51	1.9	51	87	4	146	48	9	5	37	1.57
1041798--1041858	19	3.6	18	75	25	69	34	11	16	37	1.85
1041798--1041874	32	2.4	32	91	2	120	33	12	16	36	1.88
1041890--1041915	13	2.0	13	100	0	52	30	15	15	38	1.88
1041902--1041956	20	2.8	20	100	0	110	25	20	14	40	1.90
1049969--1049993	13	1.9	13	100	0	50	36	16	16	32	1.90
1050032--1050069	20	1.9	19	94	5	67	52	10	10	26	1.68
1050671--1050714	20	2.1	22	87	8	65	29	6	20	43	1.78
1050769--1050794	13	2.0	13	100	0	52	30	15	15	38	1.88
1051436--1051566	59	2.2	59	86	2	174	31	27	6	35	1.81
1053202--1053248	21	2.3	21	82	10	62	44	4	19	31	1.70
1053370--1053408	13	3.0	13	96	0	69	35	15	17	30	1.91
1053395--1053473	20	3.7	20	73	18	68	40	15	16	27	1.88
1053370--1053473	46	2.3	46	84	3	129	38	15	17	28	1.90
1061565--1061959	51	7.6	50	69	13	219	29	26	11	32	1.92
1061685--1061754	28	2.5	28	86	4	88	22	34	18	24	1.96
1061576--1062069	262	1.9	261	93	0	853	28	27	12	31	1.93
1062070--1062147	41	1.9	41	94	0	138	19	17	17	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074198--1074222	13	1.9	13	100	0	50	32	16	16	36	1.90
1074178--1074245	33	2.1	33	89	8	104	36	16	14	32	1.89
1075809--1075851	13	3.3	13	87	6	61	83	13	2	0	0.74
1076939--1077643	55	12.3	54	83	7	757	27	26	20	25	1.99
1076939--1077643	165	4.1	166	85	7	835	27	26	20	25	1.99
1078463--1078512	19	2.6	19	96	0	91	32	12	18	38	1.87
1078565--1078590	13	2.0	13	100	0	52	30	15	15	38	1.88
1080950--1081083	52	2.6	52	84	8	191	30	26	11	32	1.91
1081099--1081170	28	2.6	28	97	0	135	22	38	20	18	1.93
1081156--1081372	51	4.2	51	82	2	211	30	27	9	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13