Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold34
Parameters: 2 7 7 80 10 50 1000
Length:  1758877

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1352 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1725890--1725985
48
2.0
48
100
0
192
37
14
16
31
1.89
1729864--1729895
16
2.0
16
93
0
55
0
15
0
84
0.63
1729901--1729938
16
2.4
16
86
4
51
7
21
2
68
1.28
1730002--1730037
15
2.4
15
90
9
56
13
8
0
77
0.98
1730002--1730044
16
2.8
15
89
3
59
13
11
0
74
1.07
1730430--1730490
28
2.3
27
82
5
70
47
8
13
31
1.71
1732977--1733065
28
3.1
28
69
19
67
41
1
3
53
1.24
1733375--1733400
13
2.0
13
100
0
52
30
0
15
53
1.42
1734393--1734435
19
2.3
19
96
4
79
27
4
27
39
1.76
1734529--1734564
16
2.2
16
90
9
56
47
19
11
22
1.80
1738165--1738198
17
2.1
17
94
5
61
26
23
5
44
1.76
1738167--1738201
16
2.1
17
89
5
54
28
22
2
45
1.67
1740414--1740668
123
2.1
123
96
0
474
23
8
29
39
1.83
1740733--1741072
170
2.0
169
83
5
427
38
15
10
35
1.82
1743966--1744041
21
3.7
21
71
11
68
31
11
19
36
1.88
1744570--1744599
14
2.1
14
93
0
51
76
0
16
6
0.99
1747326--1747529
76
2.6
77
80
5
216
28
15
29
25
1.96
1747482--1747552
28
2.5
28
88
0
97
23
18
35
22
1.96
1747541--1747710
52
3.3
50
76
14
166
33
12
24
28
1.93
1747684--1747765
27
3.0
28
82
10
98
26
21
29
21
1.99
1750183--1750208
13
2.0
13
100
0
52
38
15
15
30
1.88
1750162--1750228
33
2.0
33
85
0
89
44
16
13
25
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1750248--1750315
19
3.9
18
76
23
83
38
14
11
35
1.83
1750270--1750294
13
1.9
13
100
0
50
32
16
16
36
1.90
1750251--1750313
32
2.0
32
96
0
117
36
15
12
34
1.86
1750843--1751629
55
14.3
55
91
4
1145
20
20
29
28
1.98
1751109--1751253
26
5.3
26
65
15
87
20
18
32
28
1.96
1751139--1751227
29
3.2
29
67
20
89
19
19
33
28
1.96
1751439--1751582
27
5.3
27
60
16
64
22
18
29
28
1.98
1752611--1752658
1
48.0
1
78
0
51
0
4
6
89
0.58
1752626--1752659
12
2.8
12
90
0
59
0
2
5
91
0.51
1752595--1752658
15
4.2
15
76
11
67
0
9
4
85
0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!