genome.fa.s34.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold34
Parameters: 2 7 7 80 10 50 1000
Length:  1758877

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639762--639879	51	2.3	51	85	0	155	33	11	25	29	1.92
639608--639991	130	3.0	129	87	4	542	34	11	24	29	1.91
639813--639958	79	1.8	79	88	2	222	30	13	26	29	1.93
639891--640111	51	4.3	51	77	3	212	32	12	24	30	1.93
642455--642508	20	2.7	20	91	5	83	42	14	16	25	1.87
642406--642540	69	2.0	69	87	0	198	39	14	17	28	1.89
647254--647406	37	4.3	38	75	13	153	17	24	27	30	1.97
647269--647329	31	1.9	32	86	3	88	16	29	26	27	1.97
647561--647688	36	3.6	36	78	13	131	35	10	25	28	1.89
647811--648003	42	4.5	41	73	17	144	41	13	23	20	1.88
658474--658656	79	2.3	78	85	2	233	31	16	28	22	1.96
658611--658682	28	2.6	28	88	0	99	23	19	34	22	1.96
658532--658845	107	2.9	109	84	4	379	28	15	28	27	1.96
658723--658793	27	2.6	26	86	10	90	22	19	32	25	1.98
658778--658908	51	2.5	51	81	9	156	32	10	25	31	1.90
661235--661301	33	2.0	33	85	0	89	44	16	13	25	1.84
661256--661281	13	2.0	13	100	0	52	38	15	15	30	1.88
661343--661367	13	1.9	13	100	0	50	32	16	16	36	1.90
667478--667517	20	2.0	20	100	0	80	30	15	10	45	1.78
669847--669907	30	2.0	30	87	0	86	40	11	14	32	1.82
673073--673237	88	1.9	88	93	0	285	36	12	3	47	1.58
676297--676335	21	2.0	21	85	10	55	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682616--682646	11	2.8	11	95	0	53	54	3	0	41	1.16
686886--686911	13	2.0	13	100	0	52	38	15	15	30	1.88
690938--691194	140	1.8	142	79	5	306	42	17	15	23	1.88
692629--692659	16	1.9	16	100	0	62	54	25	0	19	1.44
692925--692975	11	4.5	11	82	7	57	3	11	1	82	0.89
692948--692985	17	2.2	17	86	9	51	0	18	0	81	0.69
694395--694466	28	2.6	28	79	0	81	25	20	33	20	1.97
694585--694761	51	3.5	50	82	6	205	34	11	25	28	1.91
694444--694700	130	2.0	130	85	3	347	33	12	26	28	1.92
697045--697151	20	5.7	19	76	18	100	41	12	16	29	1.85
697084--697114	13	2.4	13	88	0	53	38	12	16	32	1.86
697065--697134	33	2.1	33	94	0	122	40	11	18	30	1.86
697045--697149	53	2.0	53	85	7	142	40	11	17	30	1.84
698157--698404	61	4.2	61	84	6	316	25	20	27	25	1.99
698424--698793	61	6.4	60	83	10	416	24	21	27	26	1.99
698713--698798	26	3.2	26	64	15	66	23	20	30	25	1.99
698428--698793	111	3.2	110	83	10	416	24	21	27	26	1.99
698425--698797	55	6.5	55	84	8	403	25	20	27	26	1.99
699754--699829	1	76.0	1	73	0	53	2	3	7	85	0.80
699767--699829	18	3.4	19	85	12	78	3	1	9	85	0.77
699765--699830	26	2.6	26	85	2	80	4	1	9	84	0.81
699754--699821	11	6.6	10	81	11	75	1	4	8	85	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712025--712092	20	3.8	20	74	25	87	39	11	19	29	1.87
712046--712104	13	5.0	13	69	23	58	38	13	16	30	1.88
712026--712104	33	2.4	33	100	0	158	39	12	17	30	1.87
712026--712124	33	3.0	33	92	0	135	39	12	16	32	1.85
712493--713275	165	4.7	164	81	5	735	49	9	10	30	1.68
712641--713400	165	4.6	164	79	8	722	49	8	10	30	1.68
717380--717442	27	2.4	27	82	15	78	49	0	0	50	1.00
717709--717771	26	2.4	26	94	0	108	57	14	6	22	1.60
717999--718041	20	2.2	20	86	0	59	58	4	0	37	1.19
718953--719002	18	2.8	18	72	24	52	44	2	0	54	1.11
722811--722884	8	8.8	8	70	21	53	56	1	0	41	1.07
722827--722876	17	3.1	17	72	27	54	54	2	0	44	1.11
722810--722887	32	2.3	34	86	8	115	56	1	0	42	1.07
722810--722881	18	4.4	17	70	27	57	56	1	0	41	1.07
724905--724986	35	2.4	33	79	6	92	60	0	1	37	1.04
724898--724999	48	2.1	47	84	13	129	60	0	1	37	1.08
724895--724982	15	5.7	16	71	25	57	60	0	1	38	1.04
725288--725366	18	4.9	16	74	20	58	44	0	0	55	0.99
725297--725372	17	4.0	20	67	24	56	46	0	0	53	1.00
725276--725348	35	2.1	35	82	12	87	42	0	2	54	1.14
725347--725400	14	3.9	14	75	15	58	40	1	0	57	1.09
725328--725370	22	1.9	23	85	4	61	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725372--725422	20	2.5	20	77	0	57	33	1	0	64	1.05
725374--725420	15	3.2	14	80	17	51	31	2	0	65	1.04
726402--726440	19	2.0	20	90	5	62	56	0	0	43	0.99
727012--727054	21	2.1	20	83	12	52	37	4	4	53	1.43
727134--727175	20	2.2	19	86	4	57	57	0	0	42	0.99
727128--727179	17	3.1	17	75	22	56	53	0	0	46	1.00
727146--727246	5	20.0	5	70	17	57	63	0	0	35	1.01
727165--727266	38	2.6	38	83	9	118	64	0	0	34	1.00
727979--728025	22	2.1	23	84	11	62	51	0	4	44	1.21
728491--728553	2	32.5	2	79	6	67	52	4	1	41	1.32
728491--728553	24	2.7	23	82	4	74	52	4	1	41	1.32
732786--732840	2	27.5	2	92	0	92	49	0	3	47	1.19
732877--732933	28	2.0	29	86	10	82	42	0	0	57	0.98
734961--735078	35	3.4	35	80	11	143	55	1	2	40	1.24
735177--735250	26	2.9	27	78	11	75	54	2	0	43	1.14
735607--735644	15	2.6	14	88	8	58	50	0	0	50	1.00
736228--736279	3	17.3	3	100	0	104	32	0	0	67	0.91
736864--736888	11	2.3	11	100	0	50	68	16	0	16	1.22
737131--737199	21	3.2	21	80	10	70	47	0	0	52	1.00
737085--737191	49	2.2	47	78	9	117	50	0	0	49	1.00
737174--737208	15	2.5	15	90	9	56	57	0	0	42	0.99
737515--737545	7	4.4	7	100	0	62	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737598--737646	22	2.2	23	81	3	55	36	6	0	57	1.24
737626--737658	17	1.9	17	93	0	57	39	6	0	54	1.25
743626--743660	6	5.8	6	96	0	61	17	0	0	82	0.66
748159--748200	3	14.7	3	90	9	70	33	0	0	66	0.92
748346--748393	2	25.0	2	91	8	82	52	0	0	47	1.00
750453--750485	10	3.0	11	86	13	50	30	0	0	69	0.88
750540--750585	15	3.1	15	81	9	58	52	0	2	45	1.13
750944--750968	13	1.9	13	100	0	50	56	0	0	44	0.99
751286--751337	23	2.4	22	84	15	65	50	0	1	48	1.12
751697--751733	18	2.2	18	85	9	51	48	2	5	43	1.40
752851--752889	15	2.7	15	96	4	71	53	0	0	46	1.00
753299--753328	15	2.0	15	93	0	51	43	0	0	56	0.99
753510--753539	12	2.5	12	94	0	51	40	0	0	60	0.97
755689--755732	2	22.0	2	85	0	61	45	4	2	47	1.35
755679--755726	22	2.2	22	96	0	87	41	10	4	43	1.58
760074--760112	13	2.9	14	77	14	55	38	0	7	53	1.30
760808--760852	21	2.2	20	84	11	56	46	8	0	44	1.34
761454--761495	22	1.9	22	90	0	66	33	2	0	64	1.07
761541--761591	15	3.1	16	75	13	50	45	1	0	52	1.12
765986--766026	17	2.4	17	87	4	55	9	4	75	9	1.17
769848--769918	36	2.0	36	86	5	99	19	22	30	26	1.98
770011--770060	2	25.5	2	95	4	93	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770207--770239	3	11.0	3	100	0	66	66	0	0	33	0.92
771795--771846	25	2.0	25	85	10	70	50	5	7	36	1.55
771647--772010	181	2.0	182	92	3	615	45	7	9	37	1.67
774945--774974	6	5.0	6	100	0	60	83	0	0	16	0.65
775537--775561	13	1.9	13	100	0	50	36	16	16	32	1.90
775612--775664	20	2.7	20	91	5	81	33	13	20	32	1.91
783958--784010	19	2.7	20	97	2	99	28	18	16	35	1.93
784039--784105	33	2.0	33	82	5	82	34	11	16	37	1.85
785134--785184	20	2.5	20	81	12	52	45	0	1	52	1.12
785332--785366	2	17.5	2	93	0	61	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12