genome.fa.s34.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold34
Parameters: 2 7 7 80 10 50 1000
Length:  1758877

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925294--925320	7	3.9	7	100	0	54	55	0	0	44	0.99
928928--928989	17	3.5	17	73	6	52	41	0	1	56	1.09
929844--929902	29	2.0	29	83	6	73	57	0	1	40	1.09
930835--930899	29	2.2	31	84	13	91	24	3	9	63	1.39
930937--931011	29	2.6	29	78	6	80	44	0	9	46	1.35
931348--931384	13	2.8	13	87	0	56	59	0	0	40	0.97
931347--931400	28	2.0	28	82	7	67	64	0	0	35	0.94
932885--932945	15	4.2	15	81	6	72	55	0	0	44	0.99
932862--932940	37	2.1	38	84	11	101	53	0	0	46	1.00
934241--934289	23	2.1	23	88	7	73	32	0	2	65	1.04
934243--934304	21	3.0	20	77	11	63	37	0	3	59	1.13
935212--935267	28	2.0	28	89	0	85	62	7	1	28	1.32
935375--935415	3	13.7	3	100	0	82	31	0	0	68	0.90
945346--945518	79	2.2	79	80	2	186	31	12	25	30	1.93
945497--945718	51	4.4	51	83	2	284	30	13	28	27	1.94
946230--946269	16	2.5	16	100	0	80	27	0	17	55	1.43
951651--951683	15	2.3	15	89	5	50	51	9	0	39	1.34
952252--952276	13	1.9	13	100	0	50	32	20	16	32	1.94
952347--952385	20	2.0	20	89	0	60	28	7	20	43	1.79
952347--952416	33	2.1	33	84	5	88	32	10	20	37	1.85
956840--956909	26	2.7	26	86	0	95	14	5	24	55	1.60
956857--956923	26	2.7	23	76	17	62	14	5	20	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958553--958666	50	2.3	50	89	4	176	27	17	14	41	1.88
961005--961161	79	2.0	79	82	5	192	25	23	15	35	1.94
961116--961184	28	2.5	29	81	9	81	24	21	20	33	1.97
961037--961263	106	2.1	107	87	0	321	25	22	17	33	1.96
961144--961519	79	4.8	78	83	4	416	27	25	13	33	1.94
961005--961343	185	1.8	185	88	1	518	27	23	14	35	1.93
965655--965961	79	3.9	77	79	5	321	32	14	26	27	1.94
965655--965962	158	1.9	158	84	8	405	32	14	26	27	1.95
965898--966013	51	2.3	51	92	0	187	30	12	26	31	1.92
965996--966053	28	2.1	28	83	0	71	25	22	31	20	1.98
965979--966189	108	2.0	108	86	1	298	32	16	24	26	1.96
966104--966174	28	2.5	28	86	0	88	25	16	32	25	1.96
966164--966307	51	2.8	51	73	0	144	34	9	23	32	1.86
968637--968661	13	1.9	13	100	0	50	32	16	16	36	1.90
968650--968734	20	4.6	19	73	21	83	40	15	16	28	1.89
968635--968714	33	2.4	33	95	0	151	38	15	16	30	1.89
968761--968817	20	2.8	20	91	0	96	45	15	14	24	1.83
973442--973504	13	4.7	13	83	11	74	85	9	4	0	0.72
973443--973504	1	62.0	1	75	0	52	87	8	4	0	0.68
974513--974957	55	8.0	56	86	6	530	27	29	19	23	1.98
975824--975850	13	2.1	13	100	0	54	29	14	14	40	1.86
978308--978383	27	2.8	27	86	6	100	23	31	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978192--978588	52	7.6	52	71	9	225	30	25	12	31	1.92
978197--978695	264	1.9	262	88	2	757	29	26	13	30	1.94
981208--981841	62	10.2	62	88	0	874	24	25	19	31	1.98
981863--982290	167	2.5	167	80	6	445	19	24	12	42	1.86
981862--982290	86	5.1	83	77	10	383	19	24	12	42	1.86
982255--982584	120	2.7	122	81	10	370	27	25	17	29	1.97
982255--982587	61	5.4	59	79	9	312	27	26	17	29	1.97
982568--982798	41	5.4	41	78	6	230	22	25	12	39	1.90
982802--982901	50	2.1	47	87	9	139	17	23	13	47	1.82
982843--982987	75	1.9	76	82	9	181	17	23	17	41	1.90
985245--985397	79	1.9	79	81	6	186	28	24	12	34	1.92
985355--985428	28	2.6	28	80	0	85	27	25	18	28	1.98
985411--985521	51	2.2	51	90	0	168	34	22	9	33	1.87
985465--985689	80	2.8	80	86	5	305	31	23	10	34	1.89
991486--991560	20	3.8	19	78	7	87	40	13	13	33	1.83
991483--991560	40	2.0	39	87	7	113	39	14	12	33	1.84
992117--993109	57	17.1	58	82	9	1134	22	18	31	27	1.97
992117--993109	29	34.1	29	85	7	1141	22	18	31	27	1.97
992117--993110	295	3.4	292	86	7	1284	22	18	31	27	1.97
994323--994376	13	4.4	12	81	11	65	1	3	9	85	0.80
994323--994377	24	2.3	24	87	6	76	1	3	10	83	0.84
994333--994376	19	2.3	19	85	11	63	0	2	9	88	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994323--994377	11	4.6	11	82	13	65	1	3	10	83	0.84
1004055--1004097	19	2.3	19	87	0	59	67	6	11	13	1.41
1009175--1009394	79	2.8	78	89	3	323	34	13	22	29	1.93
1009459--1009630	79	2.2	79	82	4	195	30	15	25	28	1.95
1009243--1009681	237	1.9	237	83	2	587	33	12	24	29	1.92
1009563--1009682	51	2.4	51	77	5	134	30	13	26	29	1.94
1012013--1012038	13	2.0	13	100	0	52	38	15	15	30	1.88
1012025--1012066	21	2.0	21	100	0	84	28	19	9	42	1.82
1012083--1012153	32	2.2	32	90	5	108	36	18	12	32	1.88
1012109--1012135	13	2.1	13	100	0	54	40	14	14	29	1.86
1012091--1012153	19	3.6	19	70	27	59	36	17	12	33	1.88
1012547--1012571	13	1.9	13	100	0	50	36	16	16	32	1.90
1014557--1014601	20	2.1	22	80	12	58	11	28	40	20	1.86
1015035--1015059	13	1.9	13	100	0	50	40	20	8	32	1.81
1019557--1019587	3	10.3	3	92	0	53	29	35	0	35	1.58
1021174--1021238	32	2.0	32	88	11	96	29	15	16	38	1.90
1021195--1021220	13	2.0	13	100	0	52	30	15	15	38	1.88
1021280--1021332	20	2.6	21	82	8	65	28	16	16	37	1.91
1021320--1021344	13	1.9	13	100	0	50	36	16	16	32	1.90
1027908--1027953	22	2.2	21	77	18	51	34	17	0	47	1.48
1032264--1033001	52	14.8	51	76	8	587	32	17	25	24	1.96
1032362--1032912	101	5.4	101	89	1	807	33	17	25	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032873--1032951	39	2.0	39	87	0	113	26	21	24	27	1.99
1033067--1033439	33	11.6	32	77	12	282	32	14	31	20	1.93
1033180--1033288	27	3.5	29	75	24	107	38	11	30	19	1.88
1033162--1033287	61	2.1	60	96	1	234	37	13	30	18	1.89
1033256--1033506	31	8.1	31	79	13	205	32	14	30	22	1.94
1033352--1033501	30	5.0	29	84	11	185	29	16	30	24	1.97
1033062--1033439	161	2.4	160	81	8	405	33	14	32	20	1.92
1033340--1033501	61	2.7	61	88	5	231	28	16	30	24	1.96
1041540--1041577	16	2.3	17	86	4	51	44	23	5	26	1.74
1041675--1042152	32	15.2	32	82	11	406	21	30	14	32	1.93
1041679--1041982	92	3.3	93	92	4	497	23	28	16	31	1.96
1041829--1042356	35	16.1	32	77	13	328	20	31	13	34	1.91
1041682--1042353	63	10.4	65	81	10	410	21	31	14	32	1.93
1041991--1042148	34	5.1	28	85	9	93	20	36	12	29	1.90
1041897--1042356	101	4.6	101	81	9	480	20	32	13	33	1.91
1042018--1042375	136	2.6	136	84	6	467	20	33	12	34	1.89
1042364--1042872	32	15.8	31	88	6	635	28	34	19	18	1.95
1042358--1042872	64	8.0	65	89	6	784	28	34	18	18	1.95
1042358--1042872	193	2.7	191	90	5	799	28	34	18	18	1.95
1042877--1043433	92	6.1	92	92	3	865	24	25	17	31	1.97
1042878--1043477	141	4.3	138	85	8	786	24	25	17	32	1.97
1043387--1043540	52	2.9	53	80	4	184	24	24	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044479--1044628	52	2.9	52	84	7	198	34	16	16	32	1.92
1047705--1048380	49	14.0	49	76	11	574	32	18	25	24	1.97
1047697--1048291	101	6.0	101	87	2	786	32	17	25	23	1.96
1048205--1048381	48	3.9	47	76	13	199	29	20	24	25	1.99
1048119--1048378	87	3.0	87	88	1	351	30	19	23	26	1.98
1048252--1048378	39	3.0	40	71	17	130	26	20	25	27	1.99
1048441--1048757	33	9.8	32	76	10	259	34	13	32	19	1.91
1048580--1048633	27	2.0	27	92	7	92	29	14	33	22	1.94
1048540--1048666	61	2.1	60	94	1	218	38	14	29	17	1.89
1048701--1048880	31	5.9	29	79	12	166	29	16	29	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12