genome.fa.s381.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold381
Parameters: 2 7 7 80 10 50 1000
Length:  1193157

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282286--282348	24	2.6	23	78	9	63	58	3	0	38	1.14
282888--283086	106	1.9	106	91	0	326	36	11	7	45	1.68
286487--286514	10	2.8	10	100	0	56	32	10	0	57	1.33
287322--287365	2	22.0	2	100	0	88	50	0	0	50	1.00
287767--287809	20	2.2	20	87	8	61	18	6	2	72	1.19
288050--288093	17	2.5	17	88	7	61	29	0	4	65	1.12
288728--288913	38	4.9	37	77	6	178	32	23	16	27	1.96
292074--292125	16	3.2	16	78	8	61	5	5	32	55	1.47
293896--294883	261	3.8	259	78	5	899	34	13	16	35	1.87
303550--303590	19	2.2	19	86	0	55	34	0	21	43	1.53
306036--306168	71	1.9	71	83	9	173	31	13	14	40	1.84
312191--312221	16	2.0	16	93	6	55	19	12	22	45	1.84
312328--312376	16	3.1	16	88	5	64	30	8	16	44	1.76
312334--312384	16	3.2	16	86	2	68	31	7	11	49	1.68
312944--312985	21	2.0	21	86	9	59	45	0	0	54	0.99
313809--313887	19	4.4	19	75	12	76	72	0	1	26	0.93
313807--313906	24	3.9	26	85	14	145	73	0	1	26	0.90
313807--313907	29	3.7	29	73	17	106	73	0	0	25	0.90
313799--313906	53	2.0	53	98	0	207	70	0	2	26	1.01
313930--313981	14	3.4	14	73	19	50	51	1	1	44	1.23
320106--320130	2	12.5	2	100	0	50	48	0	0	52	1.00
325105--325150	20	2.3	20	84	0	56	32	4	52	10	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325232--325296	27	2.4	28	87	10	98	46	23	6	24	1.75
330103--330127	13	1.9	13	100	0	50	40	8	4	48	1.51
330422--331297	258	3.4	257	75	5	773	37	12	13	36	1.83
331652--331706	28	2.0	28	96	0	101	20	10	21	47	1.80
336230--336284	28	2.0	28	100	0	110	18	10	21	49	1.78
336266--336334	24	2.8	24	77	4	66	23	5	26	44	1.75
339808--340271	231	2.0	229	95	1	831	32	10	10	46	1.73
342369--342409	21	2.0	21	85	9	57	26	0	17	56	1.41
345813--345918	37	2.9	37	88	0	158	24	14	20	40	1.90
347035--347101	33	2.0	33	88	0	98	34	11	13	40	1.81
347055--347079	13	1.9	13	100	0	50	36	16	16	32	1.90
347142--347166	13	1.9	13	100	0	50	32	16	16	36	1.90
347175--347294	52	2.3	52	95	0	213	35	19	17	28	1.94
355171--355211	21	2.0	21	90	0	64	36	14	17	31	1.90
355276--355317	20	2.1	20	86	0	57	33	9	11	45	1.73
360501--360852	142	2.5	142	84	3	433	43	9	9	37	1.70
360825--360877	26	2.0	26	96	0	97	52	11	13	22	1.71
360977--361015	8	4.9	8	90	0	60	17	0	0	82	0.68
361678--361717	2	20.0	2	100	0	80	50	0	0	50	1.00
361846--361890	13	3.2	14	84	9	56	2	24	0	73	0.95
364184--364264	27	3.0	27	82	7	103	66	1	0	32	0.99
364198--364242	16	2.8	16	82	3	54	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364209--364253	11	4.2	11	85	2	65	68	0	0	31	0.89
364208--364255	22	2.1	23	92	3	80	70	0	0	29	0.87
364193--364281	27	3.3	27	75	18	87	66	0	0	33	0.92
364264--364295	13	2.3	15	89	10	50	56	0	0	43	0.99
364207--364306	22	4.5	21	73	18	69	62	1	0	37	1.02
364388--364560	93	1.9	93	88	2	267	30	21	13	34	1.92
364825--364868	22	2.0	22	82	8	54	38	0	9	52	1.33
368147--368192	21	2.1	22	84	4	58	19	26	19	34	1.96
370623--370668	20	2.3	20	84	0	56	32	4	52	10	1.56
372709--372757	20	2.5	20	82	0	62	36	4	48	10	1.56
375321--375345	13	1.9	13	100	0	50	32	16	16	36	1.90
379208--379248	20	2.0	21	90	4	66	41	0	7	51	1.30
383351--383377	11	2.5	11	100	0	54	33	7	7	51	1.58
391831--391971	54	2.7	52	93	4	255	41	7	4	46	1.52
392372--392427	22	2.6	21	77	8	67	48	0	0	51	1.00
398938--399086	52	2.9	51	87	4	217	31	16	18	33	1.93
399075--399099	13	1.9	13	100	0	50	36	16	16	32	1.90
399140--399206	33	2.0	33	88	0	98	40	14	11	32	1.83
399162--399186	13	1.9	13	100	0	50	32	16	16	36	1.90
400059--400101	15	3.0	15	83	6	54	32	6	11	48	1.66
403328--403468	52	2.7	52	91	2	230	31	17	17	33	1.94
403457--403481	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403546--403570	13	1.9	13	100	0	50	32	16	16	36	1.90
403524--403590	33	2.0	33	88	0	98	40	13	11	34	1.81
403628--403669	21	2.0	21	90	0	66	35	14	14	35	1.86
404105--404157	25	2.1	25	96	0	97	24	16	5	52	1.65
405994--406176	97	1.9	97	79	6	210	42	9	17	30	1.81
409947--410007	16	3.8	16	71	4	50	19	1	6	72	1.16
409978--410015	16	2.4	16	86	8	51	18	2	5	73	1.14
410576--410682	42	2.5	43	78	4	119	35	19	24	20	1.96
410572--410823	84	3.0	82	79	6	247	38	17	24	19	1.92
411719--411776	24	2.7	22	82	12	68	77	0	20	1	0.86
418511--418542	11	2.9	11	90	0	55	90	9	0	0	0.45
418510--418545	13	3.0	13	80	19	51	86	13	0	0	0.58
419561--420410	27	31.1	27	91	2	1295	23	33	14	28	1.94
419561--420410	82	10.4	81	91	1	1295	23	33	14	28	1.94
420410--420873	32	14.5	32	91	1	734	30	33	18	17	1.94
422117--422187	4	18.8	4	74	25	50	74	0	22	2	0.94
422129--422197	36	1.9	36	100	0	138	76	0	20	2	0.91
424824--426058	42	29.6	42	69	9	436	35	18	26	19	1.95
424805--426058	84	15.0	85	74	8	708	35	18	26	19	1.95
426533--426563	13	2.4	13	94	0	53	45	0	0	54	0.99
429404--429444	22	1.9	21	90	5	64	65	9	9	14	1.46
429710--429734	13	1.9	13	100	0	50	52	0	8	40	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429717--429778	18	3.5	16	77	14	52	62	0	3	33	1.11
429733--429788	18	3.1	19	79	7	71	67	0	1	30	1.01
429800--429845	19	2.4	19	85	3	56	50	6	0	43	1.28
430049--430094	13	3.4	13	78	21	58	69	0	0	30	0.89
430049--430116	28	2.4	27	88	9	93	64	1	0	33	1.02
430049--430116	11	6.6	11	74	16	65	64	1	0	33	1.02
430980--431006	2	13.5	2	100	0	54	48	0	0	51	1.00
431690--431720	2	15.5	2	93	0	53	51	3	0	45	1.17
433230--433286	25	2.3	25	78	9	62	45	1	1	50	1.22
434598--434633	2	18.0	2	100	0	72	50	0	0	50	1.00
438825--438877	20	2.6	21	85	8	74	39	16	9	33	1.81
452807--452872	22	2.8	24	73	13	64	78	15	4	1	0.98
454081--455012	230	4.1	227	85	6	1159	28	31	17	22	1.97
454084--455045	28	33.5	29	83	8	1039	28	30	17	23	1.97
455134--455242	48	2.3	46	79	11	123	21	27	20	31	1.98
455616--455691	20	3.8	19	80	3	80	34	11	13	40	1.81
455616--455694	40	2.0	39	85	7	106	34	11	13	40	1.81
460639--460663	3	8.3	3	100	0	50	32	0	0	68	0.90
460672--460722	9	5.4	9	75	15	50	45	1	1	50	1.24
461485--461537	25	2.1	26	85	3	72	47	0	0	52	1.00
462257--462317	31	1.9	32	83	9	81	40	6	11	40	1.67
462627--462668	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463999--464037	16	2.4	16	86	0	51	51	0	0	48	1.00
463988--464041	13	4.5	13	79	13	53	53	0	0	46	1.00
464357--464399	22	2.0	22	85	0	59	55	0	0	44	0.99
465732--465765	16	2.1	16	88	5	50	55	0	2	41	1.15
466379--466404	13	2.0	13	100	0	52	38	15	15	30	1.88
468613--468657	21	2.1	21	84	8	56	53	4	20	22	1.63
470461--470491	15	2.1	15	93	0	53	48	16	22	12	1.80
472571--472596	13	2.0	13	100	0	52	30	15	15	38	1.88
472717--472763	21	2.3	21	79	20	55	34	19	4	42	1.70
472719--472761	20	2.2	19	84	16	52	32	18	4	44	1.71

Tables:   1   2   3   4   5   6   7   8