genome.fa.s381.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold381
Parameters: 2 7 7 80 10 50 1000
Length:  1193157

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1131269--1131293	13	1.9	13	100	0	50	36	16	16	32	1.90
1131364--1131389	13	2.0	13	100	0	52	30	15	15	38	1.88
1139637--1139788	31	5.0	30	87	7	209	23	31	17	27	1.97
1139643--1139789	30	4.8	30	86	8	208	24	31	17	26	1.97
1139643--1139803	61	2.7	60	88	8	238	24	32	17	25	1.97
1139792--1139924	37	3.9	34	87	5	153	20	34	11	33	1.88
1139795--1139924	34	3.8	33	84	6	127	20	34	11	33	1.89
1139921--1140564	48	13.8	46	73	13	446	25	25	17	30	1.97
1140028--1140179	39	3.7	39	79	14	187	25	27	21	25	1.99
1139981--1140419	87	4.9	88	85	5	461	26	25	18	29	1.98
1140154--1140457	49	6.5	48	76	9	297	26	25	16	31	1.97
1140149--1140457	92	3.3	92	85	3	413	26	25	16	31	1.97
1144050--1144078	14	2.1	14	100	0	58	44	6	20	27	1.77
1145747--1145788	21	1.9	21	90	9	66	71	0	2	26	0.98
1150790--1150848	13	4.0	13	73	26	55	42	15	13	28	1.85
1150804--1150868	20	3.6	20	73	26	81	44	15	12	27	1.82
1150772--1150868	33	3.0	33	95	1	169	43	15	13	27	1.84
1154903--1154933	15	2.1	15	93	0	53	48	16	22	12	1.80
1157014--1157052	13	3.0	13	96	0	69	30	17	15	35	1.91
1157175--1157217	20	2.2	19	84	16	52	30	20	4	44	1.72
1159622--1159647	13	2.0	13	100	0	52	38	15	15	30	1.88
1159604--1159667	32	2.0	33	90	3	103	42	15	14	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1161494--1161568	20	3.8	20	80	7	89	38	12	14	34	1.83
1161535--1161668	51	2.6	51	95	0	232	41	11	18	28	1.85
1161446--1161618	91	1.9	92	90	1	276	43	10	16	29	1.82
1161634--1161699	20	3.3	20	72	8	71	40	15	16	27	1.88
1167641--1167717	20	3.8	20	83	6	102	41	12	15	29	1.85
1167664--1167815	75	2.0	75	91	2	243	42	11	15	30	1.81
1169079--1169132	20	2.7	20	88	2	72	37	11	18	33	1.86
1172006--1172070	33	2.0	33	93	0	112	33	15	15	35	1.89
1175356--1175410	19	2.8	19	83	2	74	41	10	9	38	1.72
1177862--1177928	33	2.0	33	88	0	98	34	11	13	40	1.81
1177882--1177906	13	1.9	13	100	0	50	36	16	16	32	1.90
1177970--1177994	13	1.9	13	100	0	50	32	16	16	36	1.90
1178003--1178122	52	2.3	52	91	0	195	35	18	15	30	1.92
1181730--1181785	20	2.7	22	75	13	64	35	12	14	37	1.84
1190706--1190730	13	1.9	13	100	0	50	36	16	16	32	1.90
1190683--1190750	33	2.1	33	88	2	102	32	14	17	35	1.91

Tables:   1   2   3   4   5   6   7   8

The End!