genome.fa.s381.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold381
Parameters: 2 7 7 80 10 50 1000
Length:  1193157

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956021--956085	31	2.1	31	97	0	121	32	24	12	30	1.92
963611--963657	21	2.3	21	82	13	62	42	14	17	25	1.87
964478--964606	52	2.5	52	96	0	240	27	15	18	37	1.91
964615--964639	13	1.9	13	100	0	50	36	16	16	32	1.90
964689--964786	19	5.8	18	71	28	90	35	17	13	33	1.88
964688--964784	32	3.0	33	95	4	164	34	17	13	35	1.89
964708--964764	13	3.9	13	76	24	60	33	17	14	35	1.90
970463--970518	20	2.8	20	89	5	78	28	17	16	37	1.91
972941--972978	13	2.9	13	96	0	67	31	15	18	34	1.92
975060--975090	15	2.1	15	93	0	53	12	22	16	48	1.80
979155--979180	13	2.0	13	100	0	52	30	15	15	38	1.88
979134--979198	19	3.6	19	73	26	70	27	12	13	46	1.79
979134--979198	34	2.0	34	93	6	116	27	12	13	46	1.79
979733--979797	33	2.0	33	87	0	94	32	15	15	36	1.89
982535--982657	60	2.0	61	85	4	169	38	15	12	34	1.85
984402--984464	32	1.9	33	87	3	92	41	19	14	25	1.89
984902--984968	37	1.9	35	88	11	102	32	11	25	29	1.92
986391--986590	79	2.5	80	81	8	239	37	13	23	26	1.91
986463--986715	127	2.0	127	83	7	327	35	13	23	27	1.93
986591--987013	79	5.4	77	82	5	447	33	13	25	27	1.94
986396--986793	205	1.9	205	85	7	549	35	14	23	26	1.93
986592--987013	158	2.7	156	84	4	521	33	13	25	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994514--994553	17	2.3	18	86	4	55	45	0	0	55	0.99
994523--994602	40	2.0	39	83	11	99	48	1	2	47	1.23
997903--997939	3	12.3	3	100	0	74	67	0	0	32	0.91
998286--998310	13	1.9	13	100	0	50	32	0	0	68	0.90
998416--998440	7	3.6	7	100	0	50	88	0	12	0	0.53
998641--998674	2	17.0	2	93	0	59	47	0	0	52	1.00
998947--999003	21	2.7	21	91	0	96	35	10	17	36	1.84
999134--999159	13	2.0	13	100	0	52	30	15	15	38	1.88
999114--999180	33	2.0	33	88	0	98	25	14	16	43	1.86
1001650--1001823	52	3.4	50	77	11	172	29	26	12	31	1.92
1001512--1001853	184	1.9	184	88	3	519	29	26	11	32	1.92
1001806--1001882	28	2.8	28	87	0	100	23	33	19	23	1.97
1001757--1001956	107	1.9	107	82	5	251	27	27	15	29	1.96
1001836--1002038	79	2.6	79	80	3	221	24	29	16	29	1.96
1004970--1004994	2	12.5	2	100	0	50	52	0	0	48	1.00
1010724--1010791	28	2.4	30	78	14	81	38	1	1	58	1.16
1015282--1015327	19	2.5	19	82	13	60	41	6	0	52	1.27
1022971--1022996	13	2.0	13	100	0	52	38	15	15	30	1.88
1022950--1023016	33	2.1	32	91	2	107	32	11	19	35	1.88
1023097--1023121	13	1.9	13	100	0	50	36	16	16	32	1.90
1023131--1023170	20	2.1	19	90	4	62	27	10	22	40	1.86
1025584--1025608	13	1.9	13	100	0	50	32	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031778--1031803	13	2.0	13	100	0	52	38	15	15	30	1.88
1033308--1033361	24	2.3	23	84	12	65	46	20	5	27	1.73
1038243--1038282	2	20.0	2	100	0	80	50	0	0	50	1.00
1040715--1040780	27	2.4	27	73	16	64	45	0	1	53	1.09
1040957--1040998	20	2.1	20	86	0	57	42	0	2	54	1.13
1041700--1041743	20	2.2	19	88	8	61	43	0	2	54	1.12
1042411--1042454	20	2.2	20	88	4	63	25	0	6	68	1.14
1046925--1047130	80	2.6	78	80	4	216	29	16	29	23	1.97
1047141--1047310	52	3.3	51	81	2	187	32	12	26	28	1.92
1047242--1047421	80	2.3	80	87	2	247	30	17	28	24	1.97
1047398--1047450	27	2.0	27	92	0	88	26	18	30	24	1.98
1047450--1047548	51	1.9	51	86	11	141	37	10	21	31	1.86
1049908--1049933	13	2.0	13	100	0	52	38	15	15	30	1.88
1049887--1049953	34	2.0	34	91	2	109	47	13	14	23	1.80
1049977--1050028	13	3.5	13	73	26	50	36	17	13	32	1.89
1049985--1050049	19	3.7	19	75	23	79	38	16	12	32	1.86
1049977--1050047	32	2.2	32	97	0	133	36	18	12	32	1.88
1050831--1051476	55	11.3	59	87	5	722	23	20	28	26	1.99
1052461--1052530	1	70.0	1	75	0	59	0	4	8	87	0.67
1052471--1052530	12	5.0	12	85	6	86	0	3	8	88	0.62
1053568--1053617	19	2.6	19	100	0	100	36	16	20	28	1.93
1055834--1055878	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057682--1057712	15	2.1	15	93	0	53	48	16	22	12	1.80
1059792--1059829	13	2.9	13	100	0	76	31	15	15	36	1.90
1062373--1062398	13	2.0	13	100	0	52	38	15	15	30	1.88
1064237--1064320	21	4.0	21	74	0	78	45	5	15	33	1.70
1064240--1064320	42	1.9	42	89	0	126	44	6	16	33	1.72
1064249--1064322	21	3.5	21	77	0	85	44	4	14	36	1.65
1065563--1066063	154	3.2	155	81	3	517	37	21	18	21	1.94
1065655--1066069	154	2.7	155	84	2	521	35	21	19	22	1.96
1068193--1068795	165	3.7	164	80	8	615	50	8	12	28	1.69
1069566--1069745	90	2.0	90	95	0	324	27	15	23	34	1.94
1077314--1077346	2	16.5	2	100	0	66	48	0	0	51	1.00
1080841--1080887	2	23.5	2	95	0	85	53	0	46	0	1.00
1080998--1081078	31	2.5	33	78	11	89	54	3	2	39	1.32
1082152--1082187	8	4.5	8	96	0	63	88	0	2	8	0.59
1082132--1082187	16	3.4	16	82	9	69	82	1	8	7	0.92
1083384--1083454	34	2.1	34	97	0	133	26	14	11	47	1.77
1085020--1085070	23	2.2	21	75	24	50	74	3	11	9	1.19
1086915--1087314	165	2.4	163	86	6	547	25	11	10	53	1.68
1086915--1087450	166	3.2	163	81	8	536	25	11	11	52	1.70
1101713--1102278	55	10.0	54	81	10	661	27	26	21	24	1.99
1102207--1102382	94	1.9	94	89	4	275	24	31	19	24	1.98
1102292--1102443	61	2.6	59	84	11	192	25	30	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1102142--1102586	155	2.9	154	91	4	683	26	29	19	24	1.98
1102344--1102536	94	2.0	93	85	10	255	24	30	18	26	1.98
1102444--1102696	55	4.5	55	85	8	359	28	28	19	23	1.98
1102292--1102970	263	2.5	264	88	5	961	26	28	19	25	1.99
1102740--1102969	122	1.9	121	86	2	327	26	26	20	26	1.99
1102715--1102970	61	4.3	59	80	10	283	26	26	21	25	1.99
1102953--1103056	45	2.4	42	84	7	120	20	26	16	36	1.93
1102953--1103088	42	3.1	43	78	10	118	16	26	14	41	1.87
1102995--1103211	120	1.8	117	79	10	253	20	23	14	41	1.88
1103104--1103207	42	2.5	41	80	10	113	16	26	11	45	1.81
1103667--1104011	35	9.9	35	97	0	654	42	6	31	20	1.76
1105408--1106073	79	8.4	79	90	2	989	26	26	14	32	1.95
1105408--1106073	236	2.8	236	90	2	996	26	26	14	32	1.95
1110220--1110249	16	1.9	16	93	6	53	36	23	20	20	1.95
1112787--1112880	42	2.2	42	83	3	118	14	25	21	38	1.92
1112872--1112965	43	2.2	43	81	7	111	22	27	14	35	1.94
1113601--1113634	16	2.1	17	88	5	52	32	5	8	52	1.56
1113987--1114525	163	3.3	160	80	9	502	27	8	10	53	1.65
1113954--1114603	331	2.0	329	78	6	688	27	9	10	52	1.66
1114883--1114930	11	4.2	11	79	10	51	72	0	25	2	0.95
1114888--1114940	24	2.3	23	84	9	65	69	0	24	5	1.09
1115877--1116111	129	1.8	129	87	0	355	32	10	13	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120426--1120452	8	3.4	8	100	0	54	11	0	11	77	0.99
1121204--1122916	28	58.5	28	71	14	822	25	14	28	31	1.95
1121306--1121509	29	6.8	29	67	16	85	23	13	29	32	1.93
1121212--1121492	95	3.0	95	83	3	318	25	13	29	31	1.94
1121414--1122918	58	25.9	58	71	11	587	25	15	28	31	1.95
1121825--1121953	66	2.0	66	83	6	163	26	15	27	30	1.96
1121797--1122249	95	5.0	95	80	6	358	25	15	28	30	1.95
1122409--1122539	66	2.0	66	86	3	183	25	14	30	29	1.95
1121151--1122906	584	3.0	584	96	0	3199	25	14	28	31	1.95
1122381--1122660	95	3.0	94	85	4	350	25	13	29	31	1.94

Tables:   1   2   3   4   5   6   7   8