genome.fa.s389.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold389
Parameters: 2 7 7 80 10 50 1000
Length:  982648

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 753 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291539--291591	20	2.7	20	100	0	106	37	15	15	32	1.88
294885--294909	13	1.9	13	100	0	50	32	16	16	36	1.90
294865--294929	33	2.0	32	82	11	78	33	16	13	35	1.89
294959--295011	19	2.7	20	85	5	72	35	16	16	30	1.92
294978--295042	32	2.0	32	85	5	87	38	15	16	29	1.90
295598--295640	20	2.0	20	86	8	59	39	13	4	41	1.66
296280--296322	20	2.0	22	86	8	63	13	25	37	23	1.92
296639--296688	21	2.4	22	80	9	61	50	0	20	30	1.49
296796--296822	13	2.1	13	100	0	54	40	14	14	29	1.86
302340--302364	13	1.9	13	100	0	50	36	16	16	32	1.90
302317--302384	33	2.1	33	91	2	111	33	14	16	35	1.89
302415--302468	20	2.7	20	83	11	65	25	18	14	40	1.89
302456--302480	13	1.9	13	100	0	50	36	16	16	32	1.90
304450--304501	20	2.4	21	81	12	61	3	25	50	21	1.65
311101--311125	13	1.9	13	100	0	50	36	16	16	32	1.90
311078--311145	33	2.1	33	91	2	111	33	14	16	35	1.89
311217--311241	13	1.9	13	100	0	50	36	16	16	32	1.90
314872--315084	37	5.7	37	80	2	144	38	20	15	24	1.92
314833--315092	112	2.3	112	80	6	269	39	19	16	25	1.92
318267--318395	52	2.5	52	92	0	213	29	18	17	34	1.94
318267--318415	52	2.9	51	86	4	201	30	18	18	32	1.94
318404--318428	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318490--318515	13	2.0	13	100	0	52	30	15	15	38	1.88
319379--319659	92	3.0	92	93	0	472	31	18	25	25	1.97
319370--319641	49	5.8	49	81	10	352	31	18	24	25	1.97
319654--319855	32	6.2	33	88	4	322	19	17	34	27	1.95
319857--320581	34	22.8	33	74	13	370	32	14	32	20	1.92
319875--320245	165	2.3	158	90	4	564	32	12	35	19	1.90
319924--320183	98	2.7	95	82	7	308	31	13	35	19	1.90
320151--320454	27	10.0	27	68	18	113	32	14	33	20	1.92
320058--320305	61	4.0	61	91	2	372	30	13	36	19	1.90
320213--320517	154	2.0	153	84	7	402	32	15	31	20	1.94
320273--320514	122	2.0	124	85	4	330	32	15	31	20	1.94
320331--320587	32	8.3	30	76	12	225	31	15	29	22	1.95
328673--328801	52	2.5	52	96	0	231	30	17	17	34	1.93
328789--328814	13	2.0	13	100	0	52	38	15	15	30	1.88
328855--328921	33	2.0	33	88	0	98	40	14	11	32	1.83
328877--328901	13	1.9	13	100	0	50	32	16	16	36	1.90
333932--334080	52	2.9	52	90	2	228	28	17	18	36	1.93
334069--334093	13	1.9	13	100	0	50	36	16	16	32	1.90
334080--334138	21	2.8	21	100	0	118	33	10	16	38	1.83
334155--334244	32	2.8	33	86	6	132	37	14	15	32	1.88
334186--334210	13	1.9	13	100	0	50	32	16	16	36	1.90
337234--337271	3	12.7	3	100	0	76	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341592--341617	3	8.7	3	100	0	52	34	0	30	34	1.58
345393--345459	33	2.1	32	82	2	80	35	10	11	41	1.76
347650--347687	20	1.9	20	100	0	76	36	10	5	47	1.61
348113--348168	20	2.8	20	88	2	76	32	7	16	44	1.74
354240--354292	21	2.5	21	81	0	70	28	18	15	37	1.91
367513--367538	4	6.5	4	100	0	52	76	0	0	23	0.78
369616--369729	51	2.3	51	87	6	162	30	11	30	27	1.91
369666--369878	79	2.7	78	82	2	257	33	13	25	27	1.93
369753--370003	125	2.0	125	85	1	333	33	13	24	28	1.93
369594--370054	204	2.2	207	83	5	567	32	13	27	27	1.93
369878--370392	79	6.5	79	81	4	536	32	13	26	27	1.94
369878--370391	158	3.2	158	82	3	633	32	13	27	27	1.93
369878--370374	237	2.1	238	82	7	609	31	13	27	27	1.94
374969--375465	103	4.8	102	78	7	437	39	10	19	30	1.85
374969--375436	206	2.3	208	83	4	579	39	10	19	30	1.85
375371--375514	78	1.8	78	89	0	225	43	8	19	29	1.80
375454--375930	103	4.6	103	78	7	455	39	8	19	31	1.83
384428--384464	20	1.9	20	94	5	67	29	10	13	45	1.77
384520--384545	13	2.0	13	100	0	52	30	15	15	38	1.88
390870--390922	25	2.2	24	83	10	63	71	11	11	5	1.29
394492--394615	52	2.4	51	93	4	205	29	17	18	34	1.94
394492--394635	52	2.8	50	84	13	177	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394624--394648	13	1.9	13	100	0	50	36	16	16	32	1.90
394689--394755	33	2.0	33	88	0	98	40	13	11	34	1.81
394711--394735	13	1.9	13	100	0	50	32	16	16	36	1.90
395878--396317	27	16.1	27	87	4	546	24	29	14	31	1.94
396058--396641	56	10.4	56	80	7	329	28	27	15	28	1.96
396279--396641	28	12.8	28	77	7	288	30	26	15	26	1.96
397210--397351	75	1.9	76	85	5	198	30	12	12	43	1.80
399852--399983	50	2.6	50	87	3	176	40	13	15	30	1.86
399953--400016	33	1.9	33	83	0	83	40	10	12	35	1.78
400643--400781	61	2.3	60	81	7	147	39	10	25	24	1.87
400764--401173	52	8.1	50	76	12	279	35	16	24	24	1.95
400783--401173	101	3.9	103	77	11	296	35	16	24	24	1.95
400715--401155	153	2.9	152	80	9	433	35	15	24	24	1.94
400979--401202	95	2.4	95	84	6	285	34	17	23	24	1.96
401036--401100	21	3.0	21	63	20	53	30	16	24	27	1.97
401031--401204	43	3.8	43	74	16	145	35	18	22	23	1.95
401229--401340	33	3.5	32	80	7	138	18	18	32	30	1.95
401373--401606	33	7.0	33	76	13	178	38	11	28	21	1.89
401390--401605	67	3.2	67	79	5	215	37	11	28	22	1.89
401603--401657	28	2.0	28	85	7	76	14	16	38	30	1.89
401541--401704	89	1.8	90	84	6	226	28	14	32	25	1.95
403677--403782	53	2.0	53	100	0	212	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415593--415724	50	2.6	51	82	5	153	41	11	15	31	1.82
415762--415820	21	2.9	20	75	12	66	37	13	10	38	1.79
417067--417270	58	3.6	54	78	9	167	43	17	12	27	1.84
417119--417267	58	2.6	58	82	0	181	44	17	12	26	1.83
419604--419629	13	2.0	13	100	0	52	30	15	15	38	1.88
420327--420370	21	2.1	21	83	8	54	25	31	4	38	1.76
422176--422214	13	3.0	13	100	0	78	38	15	15	30	1.88
423844--423868	13	1.9	13	100	0	50	32	16	16	36	1.90
423877--424006	52	2.5	52	91	3	210	33	18	16	31	1.93
430867--430908	12	3.2	13	90	6	59	85	11	2	0	0.68
430871--430909	20	2.0	20	89	0	60	87	10	2	0	0.65
432037--432215	31	5.8	30	83	7	189	24	31	16	28	1.96
432153--432902	34	22.3	34	85	8	943	20	34	12	32	1.90
432889--433112	33	6.8	33	91	4	323	28	33	18	19	1.95
433117--433823	49	14.8	48	87	6	899	25	26	18	30	1.98
433119--433823	140	5.0	142	91	5	995	25	25	18	30	1.98
433117--433823	336	2.1	331	91	3	1159	25	26	18	30	1.98
433733--433871	52	2.6	52	82	4	161	25	25	15	33	1.95
434700--434724	13	1.9	13	100	0	50	36	16	16	32	1.90
434788--434812	13	1.9	13	100	0	50	32	16	16	36	1.90
434801--434944	52	2.8	49	85	10	182	33	18	17	30	1.94
434821--434948	52	2.5	52	93	3	215	34	17	17	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441811--441846	13	2.8	13	91	8	56	86	13	0	0	0.58
441815--441852	19	1.9	19	89	5	58	86	10	2	0	0.66
443153--443370	31	7.0	30	86	6	222	24	29	16	29	1.96
443153--443370	63	3.5	61	80	9	233	24	29	16	29	1.96
443150--443370	94	2.4	94	82	7	261	24	29	15	30	1.96
443338--444098	34	22.4	34	85	9	984	20	34	12	32	1.90
444083--444306	33	6.8	33	92	4	341	28	34	18	18	1.95
444311--445026	49	15.0	49	87	6	956	24	26	18	30	1.97
444313--445017	140	5.0	142	91	5	1022	24	26	18	30	1.98
444927--445065	52	2.6	52	82	4	161	25	25	15	33	1.95

Tables:   1   2   3   4   5   6   7