genome.fa.s389.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold389
Parameters: 2 7 7 80 10 50 1000
Length:  982648

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 753 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445896--445920	13	1.9	13	100	0	50	36	16	16	32	1.90
445984--446008	13	1.9	13	100	0	50	32	16	16	36	1.90
445997--446140	52	2.8	49	83	10	164	34	18	16	31	1.93
446017--446144	52	2.5	52	91	3	197	35	17	16	31	1.92
449999--450029	15	2.1	15	93	0	53	12	22	16	48	1.80
451832--451876	21	2.1	21	84	8	56	22	20	4	53	1.63
454095--454120	13	2.0	13	100	0	52	30	15	15	38	1.88
455251--455667	56	7.5	56	71	8	269	24	21	15	38	1.92
459797--459847	20	2.5	21	80	3	68	43	9	15	31	1.80
463971--464001	4	8.0	4	92	7	55	25	0	0	74	0.82
464262--464327	2	34.5	2	72	14	50	46	4	3	45	1.38
464295--464327	10	3.3	10	95	0	57	45	6	0	48	1.27
466126--466426	155	1.9	154	80	5	340	49	6	8	34	1.61
468496--468648	79	1.9	79	90	0	243	35	9	25	29	1.88
468505--468782	130	2.1	131	80	2	317	34	11	24	29	1.91
468716--468920	78	2.6	78	82	3	243	33	13	26	27	1.93
472103--472197	19	5.6	19	72	27	106	37	15	15	30	1.89
472122--472210	13	5.9	13	72	27	70	35	15	15	32	1.90
472102--472233	32	4.1	32	96	2	230	37	15	15	31	1.89
478382--478419	13	2.9	13	88	0	58	34	18	13	34	1.89
478356--478419	26	2.5	26	84	5	76	35	17	14	32	1.89
478853--478895	20	2.1	21	91	4	70	16	46	27	9	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480890--480914	13	1.9	13	100	0	50	32	16	16	36	1.90
480870--480937	33	2.1	33	89	8	104	36	16	14	32	1.89
486475--486510	16	2.2	16	90	0	54	33	19	5	41	1.75
487609--487655	10	4.9	10	76	10	53	10	12	2	74	1.16
487609--487649	18	2.3	18	86	0	55	9	12	2	75	1.13
490900--491439	154	3.5	152	78	7	538	40	18	16	24	1.91
491639--492097	163	2.9	158	78	11	478	41	13	10	34	1.79
493013--493054	12	3.6	12	81	12	52	0	23	0	76	0.79
493709--494265	167	3.3	165	81	6	597	50	9	9	29	1.67
494273--494312	19	2.1	19	100	0	80	40	5	12	42	1.64
495787--495840	20	2.7	20	85	8	65	40	11	16	31	1.84
495896--496018	51	2.4	52	84	1	158	30	13	12	43	1.81
495917--496020	52	2.0	51	84	1	136	28	16	12	42	1.84
499672--499711	17	2.4	17	82	0	53	67	5	20	7	1.34
499755--499802	23	2.2	20	82	10	51	4	16	2	77	1.03
500171--500230	30	2.0	29	87	3	84	48	11	1	38	1.50
500516--500603	44	2.0	44	95	0	158	42	21	10	26	1.85
500735--500906	83	2.1	82	94	1	299	23	21	9	45	1.81
501946--502017	30	2.4	30	85	2	90	29	13	2	54	1.54
503284--503433	76	2.0	76	84	5	196	36	10	23	29	1.88
503404--503460	27	2.1	27	81	12	64	40	17	24	17	1.91
503537--503680	76	1.9	75	88	1	216	36	9	24	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506000--506071	20	3.5	20	72	9	65	38	9	18	33	1.83
506211--506288	21	3.7	21	84	5	104	32	17	16	33	1.93
506211--506290	42	1.9	42	92	5	135	32	18	16	32	1.93
506668--506847	90	2.0	90	100	0	360	30	16	8	44	1.78
508066--508102	3	12.3	3	100	0	74	67	0	0	32	0.91
511341--511367	2	13.5	2	100	0	54	48	0	51	0	1.00
512766--512812	20	2.3	21	85	3	60	34	8	2	55	1.42
512840--512885	20	2.3	20	85	7	58	43	2	0	54	1.12
512862--512898	11	3.2	11	85	14	56	54	0	0	45	1.00
512888--512953	21	3.1	21	77	16	73	53	0	0	46	1.00
512909--512977	19	3.6	20	77	13	65	60	0	0	39	0.97
512897--512970	22	3.4	22	74	12	71	59	0	0	40	0.97
518668--518706	19	2.2	19	86	9	55	35	0	0	64	0.94
519003--519045	2	21.5	2	100	0	86	48	0	0	51	1.00
520273--520321	24	2.0	24	100	0	98	24	16	10	48	1.76
520279--520333	13	4.5	13	80	11	71	23	18	7	50	1.71
524317--524341	11	2.3	11	100	0	50	92	0	8	0	0.40
524322--524426	52	2.0	52	94	0	183	47	1	27	22	1.62
524672--524714	16	2.7	16	92	0	77	23	16	20	39	1.92
529562--529635	20	3.8	19	82	5	76	31	14	14	39	1.87
531339--531405	33	2.0	33	88	0	98	34	11	13	40	1.81
531359--531383	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531480--531601	52	2.3	52	88	0	190	36	16	16	30	1.91
534832--534862	3	10.3	3	92	0	53	35	0	35	29	1.58
538802--538915	51	2.2	51	85	3	158	29	27	11	31	1.91
538902--538975	28	2.6	29	81	12	100	22	28	20	28	1.99
538927--539187	79	3.3	79	81	2	299	25	26	16	31	1.96
541179--541203	13	1.9	13	100	0	50	36	16	16	32	1.90
541781--541876	40	2.4	41	92	3	176	33	28	2	36	1.69
543906--543937	16	1.9	17	93	6	57	56	25	0	18	1.42
549859--549884	13	2.0	13	100	0	52	30	15	15	38	1.88
549839--549902	33	2.0	32	90	3	101	26	14	20	39	1.90
549984--550008	13	1.9	13	100	0	50	36	16	16	32	1.90
560416--560470	20	2.6	22	83	11	71	41	14	18	25	1.88
560503--560564	32	1.9	33	90	3	99	40	17	12	29	1.87
566481--566506	8	3.2	8	100	0	52	15	0	23	61	1.33
566709--566746	13	2.9	14	84	7	53	31	13	15	39	1.86
567187--567229	20	2.1	20	82	4	50	18	46	27	6	1.75
567180--567218	20	1.9	20	89	5	60	20	48	25	5	1.70
568641--568683	22	2.0	22	90	9	70	37	0	25	37	1.56
569355--569380	13	2.0	13	100	0	52	38	15	15	30	1.88
569337--569400	33	2.0	33	90	3	103	40	20	12	26	1.88
570737--570806	29	2.3	31	83	11	92	90	5	2	1	0.61
570736--570822	10	8.4	11	79	5	76	87	4	6	1	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570736--570806	1	71.0	1	80	0	79	90	5	2	1	0.60
571776--571962	94	1.9	97	86	10	267	26	28	18	26	1.98
571882--572762	62	14.6	60	82	7	929	25	27	18	27	1.98
572784--572980	88	2.3	85	80	8	213	20	23	10	45	1.81
572755--573075	42	7.6	41	71	13	154	19	25	11	44	1.84
573579--573624	21	2.2	21	84	0	56	36	19	13	30	1.90
576226--576288	28	2.3	27	86	10	83	20	28	19	31	1.97
576244--576463	79	2.8	79	85	0	305	25	26	15	31	1.96
576243--576496	79	3.2	77	82	5	292	26	25	15	31	1.96
581389--581468	36	2.2	36	86	0	106	46	3	12	37	1.60
582024--582076	20	2.7	19	85	2	70	32	16	16	33	1.92
582105--582158	20	2.7	19	88	11	74	31	12	18	37	1.89
587611--587819	68	3.1	66	75	8	197	27	14	19	38	1.91
590597--590677	20	3.5	20	66	28	54	30	11	9	48	1.71
590567--590680	50	2.3	50	92	0	192	28	14	10	46	1.77
592749--592785	2	18.5	2	100	0	74	51	0	0	48	1.00
596679--596730	27	1.9	27	92	0	86	21	30	17	30	1.96
598194--598250	16	3.4	17	79	11	64	29	8	8	52	1.62
598188--598249	33	1.9	32	83	9	81	29	9	11	50	1.70
598196--598252	17	3.4	16	78	7	60	33	8	8	49	1.65
600595--600648	20	2.7	20	91	5	83	35	18	12	33	1.89
600677--600736	20	3.0	20	82	7	86	36	18	13	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600677--600732	19	2.8	20	91	2	87	37	17	14	30	1.90
601336--601377	22	1.9	22	95	0	75	21	35	4	38	1.75
606962--607013	20	2.7	20	87	3	70	26	15	21	36	1.93
608057--608138	28	2.9	28	80	7	96	26	17	31	24	1.97
608121--608291	51	3.3	51	79	4	198	32	11	26	29	1.92
608274--608349	27	2.8	28	88	6	102	21	21	34	23	1.97
610827--610851	13	1.9	13	100	0	50	32	16	16	36	1.90
610807--610874	34	2.0	34	85	2	93	39	16	14	29	1.88
610892--610959	19	3.9	18	76	23	83	38	14	11	35	1.83
610914--610938	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4   5   6   7