genome.fa.s389.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold389
Parameters: 2 7 7 80 10 50 1000
Length:  982648

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 753 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610895--610957	32	2.0	32	96	0	117	36	15	12	34	1.86
610995--611072	21	3.8	21	86	8	115	32	12	16	38	1.87
610995--611076	41	2.0	40	88	6	121	32	12	17	37	1.86
611077--611112	18	2.0	18	100	0	72	11	5	0	83	0.80
611788--612586	55	14.3	55	86	6	1033	22	19	28	28	1.98
612115--612202	26	3.3	26	65	14	70	20	18	32	28	1.96
611787--612591	281	2.9	274	88	4	1120	23	19	28	28	1.98
611788--612586	336	2.4	335	95	1	1447	22	19	28	28	1.98
613592--613621	11	2.7	11	94	0	51	0	10	6	83	0.81
626013--626094	28	2.9	28	80	7	96	26	17	31	24	1.97
626077--626247	51	3.3	51	79	4	198	32	11	26	29	1.92
626230--626305	27	2.8	28	88	6	102	21	21	34	23	1.97
628782--628806	13	1.9	13	100	0	50	32	16	16	36	1.90
628762--628829	34	2.0	34	85	2	93	39	16	14	29	1.88
628847--628914	19	3.9	18	76	23	83	38	14	11	35	1.83
628869--628893	13	1.9	13	100	0	50	32	16	16	36	1.90
628850--628912	32	2.0	32	96	0	117	36	15	12	34	1.86
628950--629027	21	3.8	21	86	8	115	32	12	16	38	1.87
628950--629031	41	2.0	40	88	6	121	32	12	17	37	1.86
629033--629066	17	2.0	17	100	0	68	11	5	0	82	0.83
630563--630589	13	2.1	13	100	0	54	40	14	14	29	1.86
638979--639107	52	2.5	52	94	0	231	28	17	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639116--639140	13	1.9	13	100	0	50	36	16	16	32	1.90
639095--639289	32	6.0	31	76	12	101	33	16	15	34	1.91
639185--639269	13	5.5	13	69	30	53	34	17	14	34	1.90
639185--639288	32	3.2	32	91	5	165	33	17	13	35	1.89
639224--639289	19	3.7	19	71	24	72	33	16	12	37	1.86
640015--640728	49	14.9	49	79	11	804	31	18	26	24	1.97
639969--640724	92	7.9	92	90	5	1055	30	17	26	24	1.97
640734--640887	32	4.8	32	82	7	186	19	18	31	30	1.96
640734--640894	65	2.5	65	88	4	227	22	18	30	29	1.97
640922--641495	34	17.8	34	80	9	573	33	13	33	19	1.91
640897--641298	61	6.3	61	84	9	466	34	12	34	18	1.89
640897--641298	128	3.1	128	91	1	628	34	12	34	18	1.89
640897--641395	128	3.9	121	87	5	505	33	13	34	18	1.90
640922--641395	162	2.9	162	86	5	624	33	12	34	18	1.89
641211--641399	67	3.0	61	90	6	263	33	13	34	18	1.89
641340--641557	64	3.4	63	86	6	266	30	16	30	22	1.96
641347--641562	32	6.9	30	82	9	218	30	16	30	22	1.96
642844--642882	12	3.0	13	88	11	62	7	17	0	74	1.05
649882--649939	13	3.9	13	73	26	53	32	17	13	36	1.89
649857--649958	32	3.2	33	91	5	156	35	16	11	36	1.86
651469--651511	20	2.2	20	91	0	68	30	0	4	65	1.13
651729--651755	4	6.8	4	100	0	54	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663663--663711	24	2.0	24	100	0	98	32	22	8	36	1.84
667016--667412	48	8.1	48	78	9	387	26	17	44	11	1.82
667016--667423	102	4.1	99	79	10	358	26	17	44	11	1.82
667061--667412	150	2.3	150	86	0	481	26	17	45	11	1.81
667502--667540	3	13.0	3	88	0	60	2	0	64	33	1.08
667594--667635	12	3.5	12	83	0	57	11	4	71	11	1.29
667583--667635	24	2.2	24	93	0	88	16	5	66	11	1.42
670583--670642	13	4.4	14	71	10	52	55	0	0	45	0.99
670570--670666	41	2.3	43	77	18	105	52	0	1	46	1.07
671488--671580	23	4.0	23	71	16	66	65	2	1	31	1.11
671483--671580	38	2.7	37	77	10	89	66	2	1	30	1.10
671495--671580	33	2.4	36	79	11	97	65	2	1	31	1.13
671540--671598	23	2.5	23	78	8	66	69	5	0	25	1.09
671600--671659	4	15.0	4	79	6	68	0	23	0	76	0.78
671599--671665	8	7.6	8	75	17	53	0	22	0	77	0.77
671604--671666	7	8.6	7	78	5	54	0	23	0	76	0.79
671600--671663	19	3.1	22	80	14	75	0	23	0	76	0.79
671680--671726	18	2.6	18	89	0	76	65	10	19	4	1.39
671786--671840	17	3.4	17	76	18	55	52	0	0	47	1.00
672295--672324	12	2.5	12	94	0	51	0	10	0	90	0.47
674554--674607	18	2.7	19	81	13	65	72	0	1	25	0.95
674561--674606	22	2.1	21	88	11	67	76	0	2	21	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674806--674846	17	2.4	17	87	0	55	31	2	4	60	1.30
674950--675005	28	1.9	30	82	13	73	51	1	1	44	1.22
676134--676165	6	5.3	6	96	0	55	0	0	43	56	0.99
678503--678543	21	2.0	21	85	9	57	39	12	9	39	1.76
678577--678653	20	3.8	20	75	10	68	41	15	14	28	1.86
678730--678760	10	3.1	10	90	0	53	22	29	6	41	1.78
678748--678803	21	2.6	22	94	5	105	26	25	10	37	1.88
678889--678914	13	2.0	13	100	0	52	30	15	23	30	1.95
684098--684805	166	4.3	163	80	9	704	31	11	7	49	1.67
686442--686466	13	1.9	13	100	0	50	36	16	16	32	1.90
686424--686487	32	2.0	33	93	3	112	39	15	15	29	1.89
687125--687168	17	2.6	17	96	0	79	20	36	0	43	1.52
688980--689031	20	2.5	21	81	9	63	46	3	23	26	1.69
692262--692328	33	2.0	33	85	0	89	34	10	14	40	1.81
692282--692306	13	1.9	13	100	0	50	36	16	16	32	1.90
692369--692393	13	1.9	13	100	0	50	32	16	16	36	1.90
692402--692529	52	2.5	52	94	3	224	33	17	17	30	1.94
699391--699465	1	75.0	1	70	0	51	85	13	0	1	0.67
699397--699464	12	5.6	12	81	8	68	83	14	0	1	0.71
699394--699465	9	8.6	8	77	15	67	84	13	0	1	0.68
699391--699465	33	2.3	34	93	4	127	85	13	0	1	0.67
699701--699755	15	3.4	16	80	7	67	83	9	7	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699703--699756	16	3.4	16	79	5	65	83	7	9	0	0.82
699702--699756	20	2.6	21	86	11	69	83	7	9	0	0.81
700766--700879	31	3.7	31	97	0	219	27	31	18	22	1.97
700766--701079	31	9.7	32	82	8	199	22	33	14	29	1.94
700887--701081	69	2.9	67	86	8	279	21	34	12	31	1.90
700859--701276	34	12.8	33	75	13	341	20	33	12	33	1.90
700950--701237	158	1.8	156	89	4	454	20	33	12	32	1.91
701090--701276	70	2.7	70	89	5	279	18	33	12	34	1.89
701107--701296	104	1.8	104	87	4	285	20	34	11	33	1.89
701281--701350	33	2.1	35	91	5	117	25	35	17	21	1.95
701112--701329	104	2.1	102	80	8	235	22	35	12	29	1.91
701350--702066	49	14.8	49	80	10	764	25	25	17	31	1.97
701345--701857	43	11.0	43	79	13	504	25	26	18	29	1.98
701345--702013	92	7.0	92	85	7	890	25	25	17	30	1.97
701720--702124	52	7.9	52	79	9	447	24	24	16	34	1.95
701962--702515	171	3.2	170	87	4	713	23	25	14	37	1.92
706746--706791	3	15.3	3	90	0	74	28	32	0	39	1.57
708024--708077	20	2.7	20	85	0	72	37	18	9	35	1.83
708143--708167	13	1.9	13	100	0	50	36	16	16	32	1.90
709594--709630	13	2.8	13	91	0	56	70	2	0	27	1.01
709888--710312	155	2.7	155	83	6	548	24	19	19	37	1.94
709894--710312	162	2.7	155	83	7	527	24	19	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718383--718436	20	2.7	20	94	2	90	38	9	18	33	1.83
722096--722160	33	2.0	32	85	11	87	35	16	12	35	1.87
722211--722237	13	2.1	13	100	0	54	40	14	14	29	1.86
722191--722256	33	2.0	33	85	5	89	39	13	16	30	1.87
722814--722878	22	3.0	21	84	10	87	32	26	3	38	1.72
724663--724701	19	2.1	18	85	4	51	28	0	30	41	1.57
728659--728684	13	2.0	13	100	0	52	30	15	15	38	1.88
728745--728817	20	3.6	20	81	3	101	31	19	13	35	1.91
728723--728817	41	2.3	42	96	1	174	29	17	12	40	1.87
729424--729469	16	2.8	16	93	6	74	30	39	2	28	1.69

Tables:   1   2   3   4   5   6   7