genome.fa.s398.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold398
Parameters: 2 7 7 80 10 50 1000
Length:  1204187

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 796 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327990--328028	20	2.0	19	95	5	69	35	23	10	30	1.88
328038--328062	13	1.9	13	100	0	50	32	16	16	36	1.90
328162--328187	13	2.0	13	100	0	52	38	15	15	30	1.88
332148--332266	20	5.8	20	80	3	139	41	10	17	31	1.83
332150--332274	41	3.0	41	90	0	205	39	10	19	31	1.85
332833--332884	20	2.6	20	84	0	68	34	17	7	40	1.78
332893--332917	13	1.9	13	100	0	50	32	16	20	32	1.94
345152--345209	20	2.9	20	84	0	80	43	15	10	31	1.80
345123--345258	70	1.9	71	86	1	193	43	13	16	27	1.84
346297--346376	32	2.5	33	83	4	99	23	16	28	31	1.96
346335--347023	28	23.6	28	80	8	662	21	17	31	30	1.96
347038--347083	13	3.6	13	80	11	51	30	17	15	36	1.91
347031--347100	26	2.7	26	76	12	72	37	15	12	34	1.86
361614--361671	20	2.9	20	73	0	62	44	15	8	31	1.76
361567--361701	70	1.9	70	87	3	200	42	13	14	28	1.84
362574--362638	32	2.0	32	90	3	103	29	12	15	43	1.83
362604--362677	19	3.8	19	87	5	96	33	16	12	37	1.85
367777--367874	32	3.0	32	92	1	160	35	11	16	36	1.84
367775--367872	19	5.8	18	69	28	81	34	11	16	37	1.84
367916--367940	13	1.9	13	100	0	50	32	16	16	36	1.90
367951--368077	52	2.4	52	93	0	218	34	19	18	27	1.95
372246--372318	21	3.5	22	75	17	91	28	20	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373366--373391	13	2.0	13	100	0	52	30	15	23	30	1.95
377910--377952	21	2.1	20	82	4	50	62	6	6	23	1.45
377785--378234	168	2.7	166	83	5	579	50	8	8	32	1.62
380000--380058	28	2.1	28	87	6	84	44	13	16	25	1.85
379999--380242	106	2.3	108	84	2	294	41	10	13	34	1.79
382617--382665	19	2.5	20	83	3	64	28	16	14	40	1.87
384345--384370	3	8.7	3	100	0	52	34	0	34	30	1.58
392419--392451	11	3.0	11	95	0	57	30	0	18	51	1.46
393133--393365	50	4.6	51	87	8	300	27	21	14	36	1.92
393153--393365	101	2.1	100	99	0	417	27	20	15	37	1.92
393331--393379	20	2.5	20	100	0	98	30	18	12	38	1.87
395690--396053	79	4.6	79	78	4	369	29	23	12	34	1.92
395690--396053	158	2.3	158	83	5	459	29	23	12	34	1.92
395989--396104	51	2.3	51	83	0	133	30	28	10	31	1.90
396039--396213	80	2.2	79	82	3	208	31	26	11	30	1.91
396091--396242	79	1.9	80	81	6	184	31	27	9	30	1.89
408734--408764	8	3.9	8	91	0	53	90	6	0	3	0.55
408734--408764	16	1.9	16	100	0	62	90	6	0	3	0.55
408735--408784	16	3.1	16	83	13	59	86	4	8	2	0.78
409769--410290	61	8.6	61	84	3	644	27	26	16	29	1.97
409767--410318	243	2.3	241	88	1	798	27	26	16	28	1.97
410294--410470	41	4.4	41	76	11	147	22	22	15	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413542--413818	79	3.5	78	82	5	335	28	23	12	35	1.91
413761--413876	51	2.3	50	88	5	162	30	24	12	33	1.91
413691--414076	130	3.0	128	82	6	463	29	24	12	33	1.92
413810--413955	79	1.8	79	85	2	204	29	26	13	31	1.93
413890--414008	51	2.3	50	88	2	166	30	29	10	29	1.91
413966--414194	112	2.0	112	94	1	406	31	23	13	32	1.93
414089--414238	78	1.9	78	83	4	194	26	25	14	34	1.93
414090--414256	78	2.1	79	80	4	176	28	23	11	35	1.91
414625--414651	13	2.1	13	100	0	54	29	14	14	40	1.86
414637--414688	19	2.7	20	90	3	79	32	13	17	36	1.89
420932--420973	13	3.2	13	96	0	75	30	14	14	40	1.85
423459--423517	13	5.1	13	71	26	60	32	13	13	40	1.84
423471--423556	19	4.8	19	76	17	94	33	12	15	38	1.85
423459--423536	32	2.4	32	95	0	147	32	12	14	41	1.83
423602--423632	13	2.4	13	94	0	53	35	16	12	35	1.87
423586--423652	33	2.0	33	88	5	100	32	13	17	35	1.89
426749--426789	3	13.7	3	89	0	64	39	0	31	29	1.57
428454--429304	430	2.0	428	97	0	1612	35	13	18	32	1.90
434330--434373	13	3.4	13	96	0	79	31	15	11	40	1.83
435363--435530	79	2.1	79	81	5	198	33	12	26	27	1.92
435389--435539	79	1.9	79	88	0	230	32	11	27	29	1.91
435475--435590	51	2.3	51	86	10	166	31	11	27	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435395--435672	130	2.1	130	82	4	319	31	12	26	29	1.93
435527--435837	79	3.9	79	84	0	388	32	14	25	27	1.94
438063--438136	30	2.5	30	93	0	121	40	17	16	25	1.90
438719--438760	19	2.2	19	91	0	66	45	11	9	33	1.73
441211--441245	13	2.7	13	86	0	52	37	11	14	37	1.82
443321--443359	12	3.2	12	81	0	51	23	35	0	41	1.55
444626--444689	31	2.0	32	84	3	85	54	10	14	20	1.69
450334--450430	48	2.0	48	95	0	176	32	10	8	48	1.67
451855--451918	33	1.9	33	87	6	94	31	17	14	37	1.89
451950--452001	21	2.6	20	87	6	70	34	17	15	32	1.91
452558--452630	19	3.9	18	68	16	51	32	31	1	34	1.67
454702--454763	19	3.0	21	79	11	58	38	11	12	37	1.80
454712--454763	19	2.6	21	87	6	72	38	11	15	34	1.83
457214--457382	51	3.3	51	84	4	191	27	27	13	31	1.93
457318--457615	79	3.8	77	79	6	283	27	24	14	33	1.94
457476--457760	130	2.2	129	83	5	340	27	24	14	33	1.94
459875--459903	4	7.2	4	100	0	58	24	0	0	75	0.80
460471--460589	51	2.3	51	84	2	159	30	29	13	26	1.94
460521--460669	79	1.9	80	81	1	183	27	27	15	29	1.96
460401--460675	130	2.1	131	81	3	322	28	25	12	33	1.92
460600--460721	52	2.3	52	83	5	140	25	25	16	32	1.96
467944--467996	19	2.7	19	85	2	70	41	18	15	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474588--474631	14	3.2	14	74	6	54	56	0	0	43	0.99
476111--476155	19	2.2	21	88	7	67	8	11	0	80	0.92
476341--476394	20	2.9	18	76	10	54	50	0	0	50	1.00
480685--480750	29	2.2	30	78	5	71	46	3	0	50	1.16
480723--480760	15	2.4	16	86	8	51	42	2	0	55	1.14
483076--483117	21	2.0	21	100	0	84	28	14	14	42	1.84
484046--484122	28	2.8	28	78	9	95	23	29	18	28	1.97
484106--484890	32	25.8	32	84	6	724	29	30	18	20	1.97
484106--484806	115	5.8	120	83	8	668	29	31	19	20	1.97
486093--486130	20	1.9	20	94	0	67	73	0	21	5	1.02
488878--488930	13	4.5	13	73	26	64	37	16	13	32	1.88
488878--488943	33	2.0	33	91	5	107	36	18	13	31	1.90
488975--489047	20	3.7	19	87	7	85	38	17	15	28	1.90
489605--489664	29	2.1	29	100	0	120	36	26	3	33	1.73
491493--491518	13	2.0	13	100	0	52	30	15	15	38	1.88
491557--491632	21	3.7	21	78	3	100	28	15	11	43	1.83
491578--491650	20	3.6	20	77	3	92	31	17	13	36	1.89
491557--491650	41	2.3	41	100	0	188	29	17	12	40	1.86
492121--492242	60	2.0	60	100	0	244	34	16	6	42	1.74
494148--494186	13	3.0	13	96	0	69	35	15	17	30	1.91
494172--494250	20	3.7	20	75	18	70	45	15	13	25	1.83
498310--498352	22	2.0	22	86	4	61	18	11	13	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500358--500383	13	2.0	13	100	0	52	30	15	15	38	1.88
500422--500497	21	3.7	21	78	3	100	28	15	11	43	1.83
500443--500515	20	3.6	20	77	3	92	31	17	13	36	1.89
500422--500515	41	2.3	41	100	0	188	29	17	12	40	1.86
507758--507810	19	2.7	20	91	2	81	37	16	15	30	1.90
508829--508895	13	5.1	13	70	21	50	62	0	2	34	1.10
508836--508869	16	2.1	17	88	5	52	67	0	2	29	1.05
509756--509787	2	16.0	2	93	0	55	50	3	0	46	1.17
509856--509935	27	2.9	28	79	17	96	42	0	0	57	0.98
509882--509982	17	5.8	17	66	19	55	37	0	0	61	1.03

Tables:   1   2   3   4   5   6   7