genome.fa.s398.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold398
Parameters: 2 7 7 80 10 50 1000
Length:  1204187

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 796 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908287--909033	97	7.6	96	72	12	385	30	31	17	20	1.95
908289--909063	33	23.7	33	75	8	482	30	31	17	20	1.95
908725--909063	65	5.3	65	80	5	350	31	32	17	18	1.94
908725--909079	96	3.7	95	80	5	374	31	32	16	19	1.94
909131--909880	113	6.4	113	71	12	413	24	25	13	36	1.93
909350--909457	52	2.1	52	82	0	126	24	23	15	37	1.93
909402--909518	61	1.9	61	84	3	155	24	23	11	40	1.88
909536--909590	28	2.0	28	92	0	92	30	23	18	27	1.97
909600--909716	52	2.2	51	83	5	146	22	26	14	36	1.92
909426--909696	141	1.9	141	83	1	346	26	23	13	35	1.92
909678--909934	61	4.4	61	73	8	190	26	25	12	35	1.92
909338--909816	254	1.9	254	87	2	712	25	24	13	36	1.92
909193--909885	367	1.9	367	85	1	960	24	25	13	36	1.93
910380--910812	33	13.5	32	74	8	263	30	31	16	21	1.95
910380--911153	64	11.8	64	74	11	439	31	31	17	20	1.95
910743--910883	75	1.9	77	85	5	198	33	32	16	17	1.92
910816--911153	33	10.5	32	81	7	355	31	31	17	18	1.95
910816--911153	65	5.3	64	80	5	344	31	31	17	18	1.95
910816--911153	96	3.5	96	81	6	382	31	31	17	18	1.95
911221--911967	113	6.4	112	72	10	451	25	24	14	36	1.93
911262--911494	61	4.0	60	73	11	198	22	24	15	38	1.92
911327--911425	51	1.9	52	85	6	139	23	29	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911624--911678	28	2.0	28	92	0	92	30	23	18	27	1.97
911851--911972	61	2.0	61	85	0	163	25	27	11	36	1.90
912845--912878	14	2.3	15	95	5	61	79	2	5	11	1.02
932476--933214	42	17.4	43	79	3	642	16	27	17	38	1.90
936123--952274	474	33.7	474	74	9	9650	31	18	14	36	1.90
936123--952274	476	33.7	475	75	8	10770	31	18	14	36	1.90
936123--940627	949	4.7	948	80	4	4677	31	18	13	36	1.90
940200--941038	429	2.0	429	80	3	972	31	17	13	38	1.88
941195--942058	435	2.0	435	83	1	1079	30	17	13	37	1.89
942517--943699	612	1.9	612	82	3	1461	30	18	14	37	1.90
951650--952875	629	2.0	625	83	3	1550	30	19	14	35	1.91
952229--956197	476	8.4	476	83	3	4678	31	19	13	35	1.90
961175--961293	42	2.8	42	92	0	193	8	46	2	42	1.47
961208--961283	12	6.9	11	75	15	52	9	48	2	39	1.49
961199--961284	24	3.8	24	72	17	85	10	45	2	41	1.51
961190--961260	18	3.6	18	69	20	52	9	43	2	43	1.52
964125--964169	17	3.0	15	81	18	58	31	15	17	35	1.92
964127--964152	13	2.0	13	100	0	52	30	15	15	38	1.88
965151--965538	159	2.4	160	80	5	387	34	16	14	33	1.90
965207--965572	159	2.3	158	82	7	395	33	16	15	34	1.90
965366--969358	476	8.4	474	82	4	4565	32	18	13	35	1.90
969689--969735	22	2.1	22	100	0	94	31	31	4	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
969711--972684	476	6.3	474	85	2	3682	31	18	13	36	1.90
972467--972809	159	2.2	159	84	2	429	33	17	14	34	1.91
972523--972880	159	2.3	159	83	4	429	34	18	13	33	1.90
973259--974207	513	1.8	517	84	5	1307	30	18	14	36	1.91
973776--976730	475	6.2	475	84	3	3656	31	18	13	36	1.90
977153--978424	28	43.1	28	83	4	903	22	17	29	30	1.97
977153--978639	85	17.0	85	79	8	828	23	17	29	29	1.97
977153--978424	113	10.8	114	79	7	894	22	17	29	30	1.97
977433--978424	32	33.1	32	85	4	730	22	17	29	30	1.97
977153--978415	64	21.4	60	81	6	817	23	17	28	30	1.97
977319--978415	220	5.2	213	82	6	863	22	17	29	30	1.97
978262--978620	28	13.0	27	82	4	306	26	15	32	25	1.95
978223--978628	55	7.3	55	80	6	311	26	15	32	26	1.95
978262--978628	82	4.4	83	83	4	348	27	14	32	25	1.95
979598--979670	20	3.6	20	81	3	101	35	13	19	31	1.91
979616--979691	21	3.7	21	78	3	91	40	11	17	30	1.85
979598--979691	41	2.3	41	96	0	170	38	12	18	30	1.88
979730--979755	13	2.0	13	100	0	52	38	15	15	30	1.88
983818--983848	15	2.1	15	93	0	53	48	16	22	12	1.80
985834--985912	20	3.7	21	75	15	72	26	13	15	44	1.84
985899--985937	13	3.0	13	96	0	69	30	17	15	35	1.91
988380--988452	20	3.6	20	81	3	101	35	13	19	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988398--988473	21	3.7	21	78	3	91	40	11	17	30	1.85
988380--988473	41	2.3	41	96	0	170	38	12	18	30	1.88
988512--988537	13	2.0	13	100	0	52	38	15	15	30	1.88
989827--989876	19	2.7	18	76	11	55	4	14	10	72	1.26
996898--997053	71	2.2	71	90	0	240	42	12	16	29	1.84
996948--997001	20	2.7	20	82	0	63	42	11	12	33	1.79
996969--997104	51	2.7	51	91	0	218	42	13	16	26	1.86
996898--997124	122	1.9	122	86	0	328	42	13	15	28	1.85
997070--997163	40	2.3	40	88	0	143	42	17	10	29	1.82
997071--997143	20	3.7	20	100	0	146	39	19	10	30	1.86
997691--1004231	475	13.9	474	83	3	7224	36	14	17	31	1.90
1007442--1007511	32	2.2	32	92	0	113	38	15	12	32	1.86
1008261--1008491	101	2.3	103	84	5	281	31	18	26	23	1.97
1008307--1008696	52	7.9	52	77	9	354	32	17	25	24	1.97
1008308--1008696	153	2.6	149	82	4	432	32	17	25	23	1.97
1008326--1008868	101	5.8	96	84	8	433	31	18	24	25	1.98
1008658--1008942	39	6.9	39	73	14	221	28	20	23	27	1.99
1008514--1008895	87	4.3	87	89	4	552	29	19	24	25	1.99
1008514--1008895	173	2.2	177	89	5	576	29	19	24	25	1.99
1008747--1008998	125	2.0	129	85	3	350	28	19	23	27	1.98
1008910--1009099	52	3.7	52	76	4	206	32	18	25	23	1.97
1008911--1009099	101	1.9	101	88	0	288	32	18	25	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009122--1009217	30	3.3	29	82	7	124	18	16	30	34	1.93
1009208--1009309	33	3.1	34	85	4	136	35	9	33	21	1.86
1010759--1010827	8	7.8	9	77	9	63	0	1	14	84	0.70
1010750--1010815	29	2.2	32	81	13	77	0	1	18	80	0.79
1010750--1010827	14	5.4	14	78	17	72	0	1	15	83	0.72
1010752--1010815	32	2.0	33	87	9	96	0	1	18	79	0.81
1014232--1014286	24	2.3	24	100	0	110	34	20	12	32	1.90
1024681--1024743	19	3.7	18	76	24	73	38	17	12	31	1.87
1024673--1024743	32	2.2	32	94	0	124	38	18	12	30	1.88
1024699--1024725	13	2.1	13	100	0	54	40	14	14	29	1.86
1025387--1027509	159	13.4	157	66	13	512	36	14	17	30	1.90
1024999--1039063	474	29.3	474	73	10	7689	37	14	17	30	1.90
1030790--1032934	475	4.6	474	81	5	2340	36	14	17	31	1.90
1033156--1039063	476	12.5	474	82	4	6540	37	14	17	30	1.90
1038659--1039474	428	1.9	426	81	5	975	36	14	16	31	1.89
1039071--1044649	477	11.6	476	73	11	2775	36	14	18	31	1.90
1041170--1041345	91	1.9	91	97	0	334	37	14	18	29	1.91
1041266--1044646	935	3.6	934	81	6	3716	36	14	18	31	1.90
1050602--1050720	42	2.8	42	90	0	184	8	45	2	43	1.47
1050635--1050710	12	6.9	11	75	15	52	9	48	2	39	1.49
1050626--1050711	24	3.8	24	72	17	85	10	45	2	41	1.51
1050617--1050687	18	3.6	18	69	20	52	9	43	2	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052341--1059437	474	14.9	476	77	7	6223	35	14	18	31	1.91
1055215--1055253	20	2.0	20	94	0	69	28	12	20	38	1.89
1056252--1056679	216	2.0	216	92	0	712	32	14	22	30	1.94
1059479--1061829	473	5.0	475	83	3	3070	35	13	18	32	1.90
1061674--1061976	147	2.1	147	94	1	527	40	12	17	29	1.87
1061821--1063206	474	2.9	476	83	3	1600	35	14	18	30	1.91
1063206--1065064	477	3.9	473	82	4	2090	35	13	18	32	1.90
1065065--1066922	475	3.9	474	83	3	2068	36	13	18	32	1.89
1066922--1072884	475	12.6	476	81	3	6625	35	13	18	31	1.90
1066930--1072884	942	6.3	945	87	2	7338	35	13	18	31	1.90

Tables:   1   2   3   4   5   6   7