genome.fa.s398.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold398
Parameters: 2 7 7 80 10 50 1000
Length:  1204187

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 796 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074491--1074561	12	6.5	11	76	15	51	39	2	47	9	1.51
1074488--1074594	42	2.5	42	93	0	187	40	2	47	9	1.50
1079564--1083480	476	8.3	474	81	3	4393	35	13	18	31	1.91
1083267--1083687	217	1.9	215	84	3	560	35	12	20	31	1.89
1084081--1084432	195	1.8	193	82	3	456	32	14	19	33	1.91
1084274--1091450	475	15.3	473	79	7	6789	35	14	18	31	1.91
1091418--1096929	477	11.7	475	81	4	5664	35	14	18	31	1.91
1097623--1101892	948	4.5	948	83	3	4919	35	14	18	31	1.91
1097623--1101892	475	9.0	475	82	3	4732	35	14	18	31	1.91
1101255--1103200	669	2.9	663	81	5	2076	35	13	18	32	1.90
1102442--1102823	195	2.0	193	82	3	462	33	14	19	32	1.92
1102055--1103303	670	1.9	666	82	4	1433	36	14	18	31	1.90
1102665--1104651	475	4.2	474	82	4	2270	36	13	18	31	1.90
1104654--1105880	476	2.6	470	81	4	1329	35	14	18	31	1.91
1107844--1107919	12	6.9	11	75	15	52	39	2	48	9	1.49
1107843--1107928	24	3.8	24	72	17	85	41	2	45	10	1.51
1107834--1107952	42	2.8	42	92	0	193	42	2	46	8	1.47
1117575--1117682	21	5.3	18	66	30	58	10	48	1	39	1.48
1117578--1117696	42	2.8	42	93	0	202	9	46	1	42	1.46
1117611--1117686	12	6.9	11	75	15	52	9	48	2	39	1.49
1118433--1118471	15	2.6	15	83	0	51	0	15	2	82	0.79
1119323--1127727	475	17.8	476	82	3	9589	35	14	18	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127513--1127955	228	2.0	225	86	2	618	34	14	17	32	1.91
1127724--1128929	475	2.6	470	84	5	1520	35	13	18	31	1.90
1130037--1130521	159	3.1	157	71	10	455	38	10	19	31	1.86
1129398--1131454	690	3.0	684	77	6	1931	35	13	19	32	1.90
1130778--1136203	949	5.7	947	82	4	5933	35	14	18	31	1.91
1130778--1136203	475	11.4	473	83	3	5703	35	14	18	31	1.91
1139362--1142417	158	19.3	157	65	11	564	36	13	18	31	1.90
1137901--1143858	475	12.5	473	84	3	6431	36	13	18	31	1.90
1143823--1147198	476	7.2	472	80	5	3176	35	14	18	31	1.90
1147038--1147364	159	2.1	159	84	2	433	37	13	16	32	1.88
1147231--1148554	475	2.8	471	84	2	1636	35	14	19	31	1.91
1149535--1157792	475	17.4	476	82	4	9024	35	14	18	31	1.91
1152861--1154101	159	7.8	157	66	14	507	35	13	19	32	1.90
1157798--1160141	476	4.9	476	91	1	3511	36	14	18	31	1.91
1158503--1160141	158	10.3	157	65	11	733	36	14	17	31	1.90
1157798--1160141	953	2.5	951	90	2	3506	36	14	18	31	1.91
1161757--1161863	42	2.5	42	89	0	160	41	2	45	10	1.53
1161799--1161844	12	3.9	12	81	13	51	43	0	43	13	1.43
1167764--1170000	474	4.7	474	81	3	2519	35	14	18	31	1.90
1167799--1170031	948	2.4	946	83	3	2788	35	14	18	32	1.91
1169603--1170445	423	2.0	424	86	2	1185	34	13	18	33	1.90
1170027--1172877	476	6.0	476	82	4	3328	35	14	18	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1170027--1173764	908	4.0	924	81	6	3826	36	14	18	31	1.90
1183566--1183665	32	3.2	32	62	18	84	23	30	18	29	1.97
1183514--1184596	61	18.3	61	86	5	1229	24	28	20	25	1.99
1183537--1183633	29	3.2	29	62	18	72	24	30	18	25	1.98
1183720--1183810	29	3.2	29	65	20	84	27	30	19	21	1.98
1183749--1183834	26	3.2	26	63	15	66	26	30	20	22	1.98
1183514--1184596	121	9.1	121	88	6	1178	24	28	20	25	1.99
1184615--1184977	55	6.4	56	83	9	439	27	28	20	23	1.99
1185067--1185164	42	2.4	42	77	8	103	16	29	12	41	1.84
1185823--1185861	13	3.0	13	92	0	60	33	17	15	33	1.92
1188251--1188436	51	3.6	51	79	2	205	29	25	12	32	1.92
1188419--1188489	27	2.6	27	80	13	83	28	32	18	21	1.96
1188443--1188648	79	2.6	79	89	0	304	24	27	16	31	1.97
1188607--1188668	28	2.2	28	88	0	88	20	25	20	32	1.98
1193137--1193329	52	3.7	52	92	0	323	31	17	16	35	1.92
1193137--1193350	104	2.1	104	92	3	360	31	16	16	34	1.92
1193338--1193362	12	2.1	12	100	0	50	32	16	16	36	1.90
1193314--1193382	32	2.2	32	86	5	95	36	14	17	31	1.90
1193424--1193478	13	3.8	13	75	25	56	34	18	12	34	1.89
1193401--1193484	32	2.6	32	96	0	150	36	17	10	34	1.85
1193403--1193492	19	5.3	19	66	30	69	35	17	11	35	1.86
1195256--1195308	21	2.5	21	96	0	97	52	16	11	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1196230--1196257	13	2.2	13	100	0	56	39	17	14	28	1.89
1196212--1196277	33	2.0	33	88	5	98	40	13	15	30	1.85
1196296--1196358	19	3.6	19	72	24	75	38	17	11	33	1.85
1196295--1196356	32	1.9	32	96	0	115	37	16	11	35	1.84
1197448--1197473	13	2.0	13	100	0	52	38	15	15	30	1.88
1198762--1198787	13	2.0	13	100	0	52	30	15	15	38	1.88
1199395--1199479	38	2.2	40	81	8	95	36	23	4	35	1.76
1201328--1201366	13	3.0	13	96	0	69	35	15	15	33	1.89
1201352--1201431	20	3.8	20	76	15	79	42	13	15	28	1.85
1203443--1203473	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1   2   3   4   5   6   7

The End!