genome.fa.s432.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold432
Parameters: 2 7 7 80 10 50 1000
Length:  1706767

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415995--417527	61	26.4	55	83	8	1604	25	21	28	25	1.99
415995--417527	288	5.3	288	91	3	2137	25	21	28	25	1.99
418497--418572	1	76.0	1	78	0	71	0	2	9	88	0.62
418497--418571	27	2.7	27	87	8	89	0	2	9	88	0.62
418509--418571	29	2.3	27	91	8	101	0	0	11	88	0.50
418509--418573	15	4.5	15	85	14	84	0	0	12	87	0.54
430924--431022	51	1.9	51	83	6	128	36	12	22	29	1.90
431065--431408	52	6.6	52	70	13	220	31	12	26	29	1.93
430954--431401	211	2.1	211	93	0	754	31	13	26	28	1.94
431817--431873	13	3.9	13	76	24	60	35	14	17	33	1.90
431830--431892	19	3.7	18	76	24	73	33	12	17	36	1.88
431816--431900	32	2.7	32	98	0	161	32	12	17	36	1.88
431936--431960	13	1.9	13	100	0	50	32	16	16	36	1.90
431915--431981	33	2.0	34	91	2	109	37	16	11	34	1.85
437354--437394	21	2.0	21	100	0	82	26	19	9	43	1.82
437419--437479	32	1.9	32	86	6	88	37	11	13	37	1.80
439261--439428	31	5.5	30	83	6	196	24	30	15	29	1.96
439262--439428	61	2.7	61	81	7	223	24	30	15	29	1.96
439262--439428	92	1.8	91	84	8	232	24	30	15	29	1.96
439413--439569	34	4.5	34	79	9	147	23	33	9	33	1.87
439329--439579	34	7.6	34	76	13	111	23	31	13	31	1.93
439448--439581	35	3.8	35	76	12	105	23	32	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439616--440260	92	7.0	92	92	0	1020	23	25	19	31	1.98
441026--441115	13	6.0	13	71	26	63	34	14	16	34	1.89
441039--441101	19	3.7	18	76	24	73	33	12	17	36	1.88
441025--441114	32	2.8	32	96	0	162	33	14	16	35	1.89
441166--441294	52	2.5	52	90	0	213	36	17	17	29	1.92
451296--451366	34	2.1	34	97	0	133	40	12	23	22	1.88
453069--453176	52	2.1	53	91	1	173	23	35	12	29	1.91
453774--453828	19	2.8	20	83	5	76	40	16	18	25	1.91
453775--453843	20	3.6	18	80	7	66	39	14	18	27	1.90
454560--454668	41	2.7	41	92	1	175	29	24	4	41	1.75
456149--456192	21	2.1	21	83	8	54	50	20	18	11	1.77
460326--460754	217	2.0	217	94	0	752	26	13	8	51	1.69
461144--461175	3	10.7	3	93	0	55	28	34	0	37	1.57
463837--463959	37	3.3	36	80	8	138	15	10	31	42	1.81
464805--464839	17	2.1	17	94	0	61	20	8	0	71	1.11
464811--464870	26	2.3	25	80	11	66	20	1	6	71	1.17
465373--466403	42	24.5	41	71	11	400	34	18	28	18	1.95
465374--466154	85	9.3	85	80	5	766	33	18	28	18	1.95
465620--466222	85	7.2	84	75	9	300	33	19	28	18	1.96
466131--466403	85	3.2	84	79	5	291	35	17	27	18	1.94
466856--466902	21	2.2	22	81	11	53	14	10	10	63	1.51
470677--470742	33	2.0	33	85	5	89	39	12	16	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470766--470817	13	3.5	13	73	26	50	34	19	13	32	1.90
470774--470836	19	3.6	19	74	24	75	36	17	12	33	1.88
470766--470838	32	2.3	32	97	0	137	35	17	12	34	1.88
472331--472384	19	2.8	20	91	2	83	29	14	18	37	1.91
478575--478606	15	2.1	15	100	0	64	34	25	18	21	1.96
481129--481185	19	2.9	19	89	2	87	31	15	17	35	1.92
481214--481282	33	2.1	33	86	5	95	33	13	18	34	1.90
487745--487776	4	7.8	4	96	3	55	78	0	0	21	0.76
489480--489505	13	2.0	13	100	0	52	30	15	15	38	1.88
492051--492076	13	2.0	13	100	0	52	38	15	15	30	1.88
494155--494185	15	2.1	15	93	0	53	12	19	19	48	1.81
495989--496033	21	2.1	21	84	8	56	22	20	4	53	1.63
498614--498685	21	3.4	22	76	16	89	29	19	13	37	1.90
499266--499332	37	1.9	35	88	11	102	32	11	25	29	1.92
500083--500108	13	2.0	13	100	0	52	30	15	23	30	1.95
502259--502676	79	5.3	79	79	4	412	31	13	24	30	1.94
502267--502677	158	2.6	160	81	5	496	31	14	24	29	1.94
505044--505113	30	2.3	30	92	0	113	37	15	20	27	1.93
509159--509206	20	2.4	20	89	0	69	39	14	12	33	1.84
510912--510977	19	3.8	19	77	22	90	30	12	16	40	1.85
510930--510957	13	2.2	13	100	0	56	32	14	14	39	1.86
510912--510976	32	2.0	32	100	0	130	30	12	15	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511006--511074	33	2.1	33	83	5	86	33	14	17	34	1.90
515295--515361	37	1.9	35	88	11	102	29	25	11	32	1.92
515821--515846	13	2.0	13	100	0	52	30	15	15	38	1.88
515801--515864	32	2.0	33	87	3	94	28	14	17	40	1.88
522236--522276	16	2.6	16	84	0	55	85	4	0	9	0.73
522239--522283	23	2.0	23	90	0	72	86	4	0	8	0.69
523581--524131	28	19.6	29	83	5	607	29	30	16	23	1.96
523585--524131	56	9.7	57	85	3	673	29	30	16	23	1.96
524090--524178	32	2.9	33	82	9	91	30	26	19	23	1.98
525798--525837	21	2.0	21	90	5	64	22	15	10	52	1.71
526344--526587	128	1.9	127	80	4	285	45	16	21	16	1.86
527564--527888	164	2.0	165	81	3	384	31	13	9	45	1.75
528113--528146	15	2.1	17	89	10	54	20	0	0	79	0.73
528458--528496	15	2.6	15	88	8	53	79	0	20	0	0.73
528560--528592	15	2.2	15	89	10	50	39	6	21	33	1.78
530389--530762	166	2.3	165	89	2	563	29	13	9	48	1.72
530339--530770	165	2.6	164	86	3	582	31	12	8	47	1.71
532209--532263	22	2.5	22	85	5	67	65	0	3	30	1.10
532274--532800	140	3.7	139	84	4	628	34	11	10	44	1.74
532862--533204	177	1.9	178	86	0	481	23	14	18	43	1.86
533131--533589	155	3.0	153	83	5	482	24	16	19	38	1.92
533736--533857	61	2.0	61	91	0	199	36	23	11	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537807--537941	51	2.6	51	83	0	162	44	14	16	24	1.85
541207--541241	16	2.2	16	90	10	54	82	2	11	2	0.88
543020--543091	19	3.7	19	85	5	99	36	15	11	37	1.83
550810--550836	13	2.1	13	100	0	54	37	14	7	40	1.74
553349--553401	20	2.7	20	88	5	72	33	13	18	33	1.90
559871--559904	18	1.9	17	94	5	59	76	0	0	23	0.79
559866--559916	18	2.8	17	80	11	57	72	7	0	19	1.08
561955--562372	79	5.3	79	79	4	432	32	13	24	29	1.94
561958--562373	158	2.6	158	82	4	493	32	13	24	29	1.94
564742--564810	30	2.3	30	92	0	111	37	15	18	27	1.92
569008--569075	20	3.4	19	83	4	82	38	13	16	32	1.87
568951--569119	90	1.9	90	88	2	259	40	11	18	29	1.86
570782--570808	13	2.1	13	100	0	54	29	14	14	40	1.86
570857--570925	33	2.1	33	83	5	86	33	14	17	34	1.90
573580--573983	28	14.4	28	82	4	460	29	31	16	22	1.96
573942--574030	32	2.9	33	82	9	91	30	26	19	23	1.98
575655--575694	21	2.0	21	90	5	64	22	15	10	52	1.71
576180--576330	81	1.9	81	81	0	185	43	18	21	16	1.88
576201--576446	128	1.9	129	81	2	298	44	16	22	16	1.86
577427--577751	164	2.0	165	79	4	359	30	13	9	46	1.75
577983--578016	15	2.1	16	89	10	52	23	0	0	76	0.79
578418--578450	15	2.2	15	89	10	50	39	6	21	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580194--580718	165	3.2	162	82	5	597	31	12	8	47	1.70
582113--582162	21	2.3	22	86	3	66	68	0	4	28	1.08
582178--582732	140	4.0	140	85	3	686	34	11	10	42	1.76
582766--583129	177	2.1	177	81	3	430	24	13	18	42	1.87
583053--583529	155	3.1	155	80	6	445	23	16	19	40	1.91
583644--583765	61	2.0	61	91	3	201	38	22	9	29	1.85
587715--587849	51	2.6	51	88	0	189	42	14	17	25	1.86
591120--591168	17	2.8	17	87	12	64	79	2	14	4	0.97
591147--591193	15	2.8	16	84	12	51	70	8	14	6	1.32
594240--594322	13	5.5	13	70	27	58	33	10	18	37	1.85

Tables:   1   2   3   4   5   6   7   8