genome.fa.s432.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold432
Parameters: 2 7 7 80 10 50 1000
Length:  1706767

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1580691--1580768	9	9.0	9	69	8	54	10	43	2	43	1.52
1580691--1580765	18	3.8	18	71	19	60	10	42	2	44	1.53
1586150--1586268	42	2.8	42	90	0	184	9	45	2	42	1.49
1586165--1586235	18	3.6	18	69	20	52	9	43	2	43	1.52
1590016--1590056	20	2.0	20	86	9	57	48	0	0	51	1.00
1590022--1590063	20	2.0	20	82	13	50	47	4	0	47	1.23
1594642--1594723	28	3.0	28	77	10	80	58	6	21	13	1.57
1595616--1595764	80	1.9	80	81	5	185	42	18	6	32	1.77
1596806--1596865	30	2.0	30	96	0	111	33	11	30	25	1.91
1598637--1598721	29	2.9	29	94	0	143	16	11	12	58	1.62
1600857--1600893	18	2.1	18	100	0	74	37	10	21	29	1.88
1601834--1601880	19	2.4	20	85	3	60	27	19	14	38	1.91
1602453--1602518	35	1.9	34	90	3	105	30	15	25	28	1.96
1610968--1611043	12	6.9	11	77	15	61	39	1	48	10	1.46
1610967--1611052	24	3.8	24	73	17	85	41	1	45	11	1.48
1610988--1611048	9	7.1	9	72	10	56	42	1	44	11	1.50
1610958--1611076	42	2.8	42	90	0	184	42	1	46	9	1.46
1611012--1611057	12	3.9	12	81	13	51	43	0	43	13	1.43
1619478--1619611	29	4.8	29	73	14	118	17	11	11	58	1.61
1621010--1621468	159	2.9	156	78	7	397	39	15	15	29	1.88
1622989--1623036	20	2.5	20	93	3	80	37	20	10	31	1.87
1633621--1633795	94	1.9	94	90	2	280	38	10	21	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1637539--1637573	14	2.5	14	90	0	52	42	14	8	34	1.76
1638404--1638429	13	2.0	13	100	0	52	38	15	15	30	1.88
1638387--1638449	31	2.0	31	87	6	90	39	17	14	28	1.89
1640637--1640686	21	2.3	21	80	10	57	56	4	18	22	1.58
1644503--1644528	13	2.0	13	100	0	52	30	15	15	38	1.88
1644649--1644694	21	2.2	20	81	11	58	32	19	4	43	1.71
1646189--1646214	13	2.0	13	100	0	52	38	15	15	30	1.88
1646171--1646234	32	2.0	33	90	3	103	39	18	14	28	1.90
1647765--1647802	19	2.1	17	90	9	58	2	0	13	84	0.73
1661515--1661696	94	1.9	95	92	1	303	36	13	23	26	1.92
1661542--1661726	94	2.0	93	88	6	266	36	14	22	27	1.93
1661671--1663978	769	3.0	769	99	0	4537	35	14	21	28	1.93
1669978--1670020	21	2.0	22	81	4	52	32	13	6	46	1.71
1685573--1685597	13	1.9	13	100	0	50	44	16	8	32	1.76
1685569--1685648	33	2.4	33	91	0	133	36	18	12	32	1.89
1689215--1689995	156	5.0	156	79	4	682	35	20	19	24	1.95
1689224--1689814	312	1.9	312	84	2	801	36	20	19	23	1.95
1689215--1689878	312	2.1	311	82	3	791	35	20	19	24	1.96
1689681--1689966	154	1.9	156	84	5	393	37	18	18	24	1.94
1690550--1690880	130	2.5	130	84	5	438	43	10	8	36	1.70
1690908--1691171	127	2.1	130	89	3	410	40	12	11	35	1.80
1690612--1691335	292	2.5	294	86	3	987	41	11	11	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1691042--1691491	164	2.8	164	96	0	814	38	10	13	37	1.80
1692451--1692489	16	2.5	15	80	8	51	23	7	5	64	1.40
1692458--1692493	16	2.2	16	90	0	54	25	5	5	63	1.38
1693584--1693903	155	2.1	156	82	5	389	38	19	19	23	1.94
1694414--1695112	312	2.3	309	79	5	705	22	18	21	37	1.94
1694420--1695308	155	5.7	155	80	5	732	23	18	20	37	1.94
1697122--1697812	156	4.5	154	78	9	601	23	18	20	37	1.95
1697314--1697873	301	1.9	302	81	4	682	23	19	21	35	1.96
1701209--1701240	13	2.5	13	94	0	55	62	0	34	3	1.11
1704981--1705046	33	2.0	33	82	5	80	42	13	12	31	1.81
1706546--1706636	43	2.1	45	93	4	159	32	16	5	45	1.70
1706545--1706616	23	3.3	23	62	18	62	37	13	2	45	1.59

Tables:   1   2   3   4   5   6   7   8

The End!