genome.fa.s432.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold432
Parameters: 2 7 7 80 10 50 1000
Length:  1706767

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929065--929138	24	3.2	24	68	14	73	37	12	27	22	1.90
929280--930282	28	34.5	28	78	9	843	22	17	30	29	1.97
931532--931619	11	7.9	10	74	17	59	3	3	13	79	0.99
931557--931621	23	2.8	23	84	11	87	1	4	12	81	0.91
932782--932878	19	5.7	19	70	27	83	32	12	18	36	1.88
932803--932859	13	3.9	13	72	24	51	33	14	19	33	1.91
932783--932880	32	3.0	32	93	1	169	33	12	18	35	1.88
932919--932943	13	1.9	13	100	0	50	32	16	16	36	1.90
941198--941390	30	6.3	30	86	7	264	24	29	17	29	1.97
941193--941466	62	4.4	62	84	7	319	21	30	17	29	1.97
941256--941833	31	17.9	32	79	9	403	20	33	14	31	1.93
941350--941798	67	6.9	64	80	8	453	20	34	14	30	1.92
941289--941815	130	4.1	130	84	7	630	20	33	14	31	1.93
941350--941798	161	2.8	158	84	7	544	20	34	14	30	1.92
941840--942026	32	5.8	32	85	3	250	31	34	18	16	1.93
941834--942026	96	2.0	97	90	3	309	30	34	17	17	1.93
942022--942676	49	14.0	47	79	11	692	25	25	17	32	1.97
942174--942632	43	10.1	43	79	12	506	25	25	17	31	1.97
942031--942685	92	7.1	92	94	1	1076	25	25	16	32	1.97
942543--942610	22	3.1	22	62	19	52	26	25	17	30	1.97
942586--942707	52	2.3	55	84	4	169	25	23	13	36	1.92
944679--944761	10	7.9	10	76	9	76	4	2	12	80	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944693--944758	19	3.5	18	73	22	64	3	3	13	80	0.95
944693--944765	38	2.0	36	86	10	103	2	2	13	80	0.93
946152--946208	13	3.9	13	76	24	60	35	14	17	33	1.90
946132--946229	32	3.0	32	95	1	169	34	11	17	36	1.85
946130--946227	19	5.8	18	70	28	81	33	11	17	37	1.85
946268--946292	13	1.9	13	100	0	50	32	16	16	36	1.90
961622--961806	51	3.6	51	92	0	280	41	11	19	27	1.86
961741--961869	31	3.9	31	70	20	100	41	12	18	27	1.86
961774--961828	20	2.8	20	88	0	83	40	14	12	32	1.84
962551--962597	17	2.9	16	78	9	51	36	2	0	61	1.08
964973--964997	6	4.2	6	100	0	50	52	0	32	16	1.44
965684--965832	81	1.9	80	80	5	176	42	16	6	33	1.75
970890--970948	28	2.1	28	87	6	84	61	8	18	11	1.55
970890--970958	28	2.5	28	83	9	79	62	7	18	11	1.51
971053--971083	11	2.8	11	100	0	62	9	9	0	80	0.90
973021--973063	16	2.6	16	85	10	52	48	0	2	48	1.14
973184--973213	15	2.0	15	93	0	51	43	0	0	56	0.99
973225--973266	21	2.0	21	85	4	57	54	2	7	35	1.41
973326--973358	14	2.3	15	89	5	50	69	0	0	30	0.88
975801--975834	3	11.3	3	100	0	68	32	0	0	67	0.91
976657--977001	175	2.0	173	88	1	519	20	12	20	46	1.82
982076--982107	16	1.9	17	93	6	57	34	6	6	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
982358--982418	30	2.0	29	84	12	79	60	6	11	21	1.53
982808--982890	27	3.0	27	70	15	71	36	8	3	51	1.50
982947--982985	14	2.7	14	88	4	51	30	15	15	38	1.88
984411--984557	36	4.2	35	76	5	102	38	16	16	28	1.90
984513--984667	35	4.5	34	78	8	134	38	16	18	26	1.92
998156--998216	9	7.1	9	76	10	56	13	40	1	44	1.53
998145--998237	24	4.1	24	72	16	74	13	41	1	43	1.52
998128--998246	42	2.8	42	87	2	141	12	42	0	43	1.48
1000033--1000086	28	1.9	28	85	7	74	62	9	16	11	1.52
1009145--1009200	20	2.8	20	100	0	112	30	14	14	41	1.85
1011611--1011778	51	3.3	50	84	5	203	29	25	13	32	1.93
1011714--1011934	79	2.8	79	86	2	300	28	25	14	31	1.95
1017290--1017315	13	2.0	13	100	0	52	38	15	15	30	1.88
1019534--1019578	21	2.1	21	84	8	56	53	4	20	22	1.63
1021382--1021412	15	2.1	15	93	0	53	48	16	22	12	1.80
1023492--1023530	13	3.0	13	100	0	78	30	15	15	38	1.88
1026077--1026102	13	2.0	13	100	0	52	38	15	15	30	1.88
1034136--1034740	61	10.1	61	81	8	672	25	27	19	27	1.99
1034195--1034292	32	3.2	32	61	19	80	23	26	18	31	1.97
1034116--1034740	178	3.5	178	87	3	848	26	26	19	27	1.99
1037848--1038054	79	2.6	79	89	3	292	29	25	12	32	1.92
1037988--1038104	50	2.3	50	85	4	155	29	25	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038039--1038267	79	2.9	78	83	3	280	26	25	16	31	1.96
1037912--1038183	129	2.1	129	81	6	318	28	25	13	32	1.94
1043022--1043137	60	2.0	59	83	5	146	21	13	12	51	1.74
1043391--1043662	144	1.9	144	81	6	336	31	19	13	35	1.90
1046388--1046473	44	2.0	44	93	2	147	34	18	11	34	1.87
1047836--1049735	159	12.0	157	74	7	1155	30	17	13	39	1.87
1051006--1051073	19	3.9	19	78	21	85	35	11	14	38	1.83
1051008--1051070	32	2.0	32	96	0	117	34	12	15	36	1.86
1051027--1051051	13	1.9	13	100	0	50	36	16	16	32	1.90
1051113--1051139	13	2.1	13	100	0	54	29	14	14	40	1.86
1051155--1051186	16	2.0	16	100	0	64	31	12	18	37	1.88
1053608--1053777	51	3.3	51	77	4	187	30	25	11	32	1.91
1053760--1053841	28	2.9	28	82	7	96	24	31	17	26	1.97
1058063--1058112	14	3.6	14	71	17	50	68	4	18	10	1.34
1058063--1058115	27	1.9	28	92	3	90	67	3	16	11	1.35
1065632--1065866	49	4.7	50	85	2	156	31	17	27	22	1.97
1065667--1065866	49	4.1	49	89	0	283	31	18	27	23	1.98
1065790--1065866	27	3.0	27	61	24	67	31	16	29	22	1.96
1066434--1066589	61	2.5	62	87	1	224	23	31	18	26	1.98
1066593--1066788	54	3.5	54	79	11	241	26	27	20	25	1.99
1066618--1066785	61	2.9	59	81	13	231	26	26	20	26	1.99
1066597--1066787	61	3.4	56	80	13	230	27	26	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066465--1066953	209	2.3	209	86	3	674	24	29	18	26	1.98
1066645--1067053	155	2.6	154	87	4	568	24	30	18	26	1.98
1066829--1066953	61	2.0	61	92	0	205	23	31	18	27	1.97
1066862--1067137	100	2.8	99	92	5	449	24	32	19	22	1.98
1067057--1067312	54	4.6	54	88	6	370	26	28	21	23	1.99
1066962--1067528	263	2.1	268	89	4	878	25	29	20	25	1.99
1067165--1067459	155	1.9	148	87	6	421	25	29	20	24	1.99
1067320--1067521	55	3.6	55	81	9	244	25	27	21	25	1.99
1067347--1067529	62	3.1	61	84	7	243	24	27	20	27	1.99
1067111--1067550	210	2.1	209	90	3	690	24	28	20	26	1.99
1067519--1067773	42	5.8	44	75	12	215	18	28	13	39	1.89
1067578--1067773	89	2.3	85	85	7	252	19	27	15	38	1.91
1068404--1068429	13	2.0	13	100	0	52	30	15	15	38	1.88
1070760--1071087	158	2.1	155	85	6	439	27	26	14	31	1.95
1070760--1071133	158	2.4	158	83	6	422	27	25	14	31	1.95
1070805--1071133	79	4.2	80	80	6	375	27	25	14	31	1.95
1072186--1072279	49	1.9	49	93	0	161	36	17	22	24	1.95
1072199--1072507	88	3.5	88	88	0	458	29	17	25	26	1.98
1072248--1072496	39	5.9	39	70	16	165	28	18	26	27	1.98
1072111--1072358	137	1.8	137	92	0	424	31	16	24	27	1.97
1072554--1073230	33	21.1	31	81	10	521	36	13	29	20	1.91
1072554--1073136	66	9.0	65	82	7	584	36	13	29	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1072729--1073045	60	5.1	60	85	7	411	35	12	30	20	1.90
1072548--1073045	126	3.9	126	88	4	662	37	12	30	19	1.89
1072949--1073240	31	9.2	32	85	8	291	35	14	28	20	1.92
1074505--1074564	14	4.2	14	78	19	70	0	1	15	83	0.73
1074513--1074554	6	7.3	6	85	15	54	0	2	11	85	0.68
1074508--1074577	33	2.1	33	84	5	88	2	4	14	78	1.02
1077300--1077340	20	2.0	20	100	0	82	36	19	29	14	1.92
1079991--1080098	51	2.1	51	84	5	146	36	9	22	32	1.86
1082577--1082651	20	3.8	20	85	3	98	41	18	16	24	1.90
1082565--1082594	13	2.3	13	94	0	51	40	16	16	26	1.90

Tables:   1   2   3   4   5   6   7   8