genome.fa.s462.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold462
Parameters: 2 7 7 80 10 50 1000
Length:  1234098

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119360--119500	52	2.7	53	89	4	207	32	18	17	31	1.94
119384--119500	52	2.2	52	96	0	216	35	18	17	28	1.94
123904--123957	20	2.6	22	82	14	78	33	18	12	35	1.89
123904--123976	21	3.5	20	85	10	78	34	17	12	35	1.88
124014--124052	21	1.9	20	89	5	60	28	12	25	33	1.93
125810--125861	21	2.4	22	90	6	88	28	21	11	38	1.88
127945--128080	72	1.9	72	81	6	168	55	5	12	26	1.57
131584--131712	52	2.5	52	97	0	240	31	17	16	34	1.92
131721--131745	13	1.9	13	100	0	50	36	16	16	32	1.90
131786--131852	33	2.0	33	88	0	98	40	14	11	32	1.83
131808--131832	13	1.9	13	100	0	50	32	16	16	36	1.90
133192--133216	13	1.9	13	100	0	50	36	16	16	32	1.90
134905--134958	20	2.7	20	80	8	65	38	16	14	29	1.89
134946--135081	53	2.6	53	93	0	227	36	17	17	27	1.93
137718--137755	13	2.9	13	88	0	58	36	15	15	31	1.90
143852--143901	24	2.1	24	85	7	66	30	4	6	60	1.39
145408--145454	21	2.2	21	85	7	60	46	23	23	6	1.75
147350--147386	19	2.1	19	85	10	51	18	5	24	51	1.67
150650--150714	1	65.0	1	79	0	58	87	3	7	1	0.70
150650--150714	14	4.7	13	79	20	69	87	3	7	1	0.70
150650--150714	18	3.5	17	82	15	76	87	3	7	1	0.70
150650--150713	9	6.9	9	81	18	69	87	3	7	1	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150650--150715	10	6.9	10	76	8	66	86	3	9	1	0.74
150657--150715	30	1.9	31	86	10	86	84	3	10	1	0.80
160532--160603	20	3.5	20	70	17	58	44	11	11	33	1.75
163583--163677	20	4.7	20	76	3	100	31	16	10	41	1.83
170038--170157	52	2.3	51	92	4	197	30	18	17	33	1.94
170166--170190	13	1.9	13	100	0	50	36	16	16	32	1.90
170231--170297	33	2.0	33	88	0	98	40	13	11	34	1.81
170253--170277	13	1.9	13	100	0	50	32	16	16	36	1.90
181076--181314	93	2.6	92	82	1	271	29	23	14	32	1.94
181544--181586	22	2.0	21	86	4	59	58	0	20	20	1.40
181870--182305	44	9.8	44	76	10	318	18	23	15	42	1.88
182359--182520	85	1.9	85	84	0	216	17	20	14	46	1.83
183435--184090	164	4.0	165	76	8	581	31	10	8	49	1.66
185167--185318	79	1.9	80	82	4	191	36	13	21	28	1.91
185741--185768	13	2.2	13	100	0	56	35	14	10	39	1.81
201083--201194	28	4.0	28	83	6	145	34	30	15	19	1.93
201083--201194	57	2.0	56	84	5	145	34	30	15	19	1.93
201199--201315	33	3.6	32	83	4	144	17	29	11	40	1.86
201174--201315	67	2.1	67	87	6	200	20	30	12	36	1.90
201174--201315	33	4.3	32	78	7	124	20	30	12	36	1.90
202674--202714	20	2.0	20	85	0	55	34	14	7	43	1.73
206156--206212	22	2.6	22	88	0	78	49	24	3	22	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209084--209191	20	5.8	19	74	18	93	29	16	12	40	1.86
209084--209190	53	2.0	53	83	7	137	29	15	13	41	1.85
209101--209170	33	2.1	33	94	0	122	30	17	12	40	1.87
209121--209151	13	2.4	13	94	0	53	32	16	12	38	1.86
209101--209203	53	1.9	53	80	7	120	31	17	12	38	1.87
211566--211681	51	2.3	51	83	0	142	31	25	12	31	1.92
211617--211922	79	3.9	79	75	4	267	27	24	14	33	1.94
215299--215356	29	2.0	29	100	0	116	27	6	17	48	1.72
216992--217095	42	2.5	42	87	0	145	42	2	43	11	1.56
222860--222927	34	2.0	34	85	5	93	50	1	20	27	1.57
222941--222967	13	2.1	13	100	0	54	33	0	14	51	1.43
223677--223729	20	2.7	20	100	0	106	26	9	15	49	1.74
223696--223758	33	1.9	32	87	3	90	25	11	17	46	1.81
223677--223778	52	1.9	53	82	2	125	28	10	17	43	1.83
225451--225476	13	2.0	13	100	0	52	38	15	15	30	1.88
225433--225496	32	2.0	33	87	3	94	40	17	14	28	1.88
227698--227747	21	2.3	21	80	10	57	56	4	18	22	1.58
229545--229575	15	2.1	15	93	0	53	48	16	22	12	1.80
231657--231692	13	2.8	13	95	0	63	33	16	16	33	1.92
231806--231851	21	2.2	20	81	11	58	32	19	4	43	1.71
234216--234241	13	2.0	13	100	0	52	38	15	15	30	1.88
234198--234261	32	2.0	33	87	3	94	40	17	14	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238938--238963	13	2.0	13	100	0	52	30	15	15	38	1.88
239661--239704	21	2.1	21	83	8	54	25	31	4	38	1.76
241510--241535	13	2.0	13	100	0	52	38	15	15	30	1.88
243615--243645	15	2.1	15	93	0	53	12	22	16	48	1.80
247709--247734	13	2.0	13	100	0	52	30	15	15	38	1.88
250533--250606	21	3.6	20	87	3	94	36	10	21	31	1.88
253089--253492	80	5.1	79	75	8	300	30	25	9	34	1.88
256350--256388	20	2.0	19	95	5	69	35	23	10	30	1.88
256354--256449	20	4.8	20	77	10	70	40	18	13	27	1.88
261700--261738	13	3.0	13	88	0	60	38	12	17	30	1.88
264149--264187	20	2.0	19	95	5	69	35	23	10	30	1.88
264310--264335	13	2.0	13	100	0	52	38	15	15	30	1.88
264292--264355	33	2.0	32	87	9	94	37	20	14	28	1.91
265814--265864	22	2.5	19	76	23	50	49	5	0	45	1.26
265981--266019	20	1.9	21	84	5	53	53	0	0	46	1.00
266076--266113	20	1.9	19	89	5	58	52	0	0	47	1.00
266336--266363	12	2.3	12	100	0	56	14	0	0	85	0.59
275879--275911	2	17.5	2	87	12	52	45	0	0	54	0.99
276453--276492	2	20.0	2	100	0	80	50	0	0	50	1.00
279406--279985	166	3.5	165	78	9	472	49	10	10	30	1.70
281856--282789	166	5.7	166	85	4	1106	30	9	10	49	1.69
281874--282788	329	2.8	331	83	5	1152	31	9	9	49	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282937--282962	5	5.2	5	100	0	52	42	0	0	57	0.98
283702--283728	13	2.1	13	100	0	54	29	14	14	40	1.86
283709--283768	20	3.0	20	75	4	68	31	13	18	36	1.89
289846--289887	20	2.2	20	87	8	61	28	2	21	47	1.63
290013--290052	13	3.1	13	96	0	71	32	15	12	40	1.84
291081--291142	20	3.0	22	81	11	85	35	3	29	32	1.73
296947--297018	20	3.6	20	78	0	81	34	12	9	43	1.76
297927--297965	20	1.9	21	89	5	62	23	10	10	56	1.63
305369--305526	27	5.5	30	86	6	129	25	28	13	32	1.93
305368--306684	28	45.6	28	78	10	626	26	31	16	25	1.96
305400--306666	55	22.5	55	79	10	600	26	31	16	24	1.96
305538--306216	82	8.1	82	83	6	558	27	31	15	25	1.96
305541--306009	192	2.4	192	91	0	751	25	30	14	29	1.95
305931--306716	175	4.5	175	85	6	932	27	32	18	21	1.97
305739--306716	147	6.8	141	81	8	780	27	32	17	23	1.97
307286--307360	20	3.8	20	78	0	78	33	10	12	44	1.76
307286--307363	40	2.0	39	84	2	102	33	10	12	43	1.77
308269--308307	20	1.9	21	89	5	62	23	10	10	56	1.63
310356--310725	186	2.0	186	96	0	677	27	24	19	28	1.99
312465--312668	97	2.1	97	84	5	261	39	10	19	30	1.86
314972--315100	52	2.5	51	77	2	141	43	14	14	27	1.85
315138--315192	20	2.7	21	83	11	69	32	18	10	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316482--316507	13	2.0	13	100	0	52	38	15	15	30	1.88
316805--318792	28	68.7	28	76	8	1309	24	17	30	28	1.97
316815--318776	58	33.9	57	74	9	1117	24	16	30	28	1.97
316805--318792	86	22.9	85	78	5	1628	24	17	30	28	1.97
319590--320047	28	16.3	28	80	5	460	29	29	17	23	1.97
319590--320044	113	4.0	112	82	4	504	28	29	18	23	1.97
320036--320121	32	2.7	32	88	0	127	30	24	22	23	1.99
323895--323921	13	2.1	13	100	0	54	40	14	14	29	1.86
326708--326966	126	2.0	127	93	3	448	28	13	16	40	1.87
329665--329720	30	2.0	28	86	10	78	14	1	44	39	1.55

Tables:   1   2   3   4   5   6   7   8