genome.fa.s462.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold462
Parameters: 2 7 7 80 10 50 1000
Length:  1234098

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335635--335709	20	3.8	20	80	0	78	42	13	13	30	1.82
339132--339278	33	4.6	32	75	13	133	30	21	12	36	1.90
339217--339241	13	1.9	13	100	0	50	32	16	20	32	1.94
339712--339778	37	1.9	35	88	11	102	34	11	23	29	1.91
342047--342359	158	2.0	158	100	0	626	49	13	15	22	1.79
342454--342487	11	3.2	10	88	12	50	76	0	23	0	0.79
346489--346545	19	2.9	20	84	7	64	38	10	15	35	1.82
346925--346949	13	1.9	13	100	0	50	32	16	16	36	1.90
347031--347082	20	2.7	20	90	3	79	38	21	13	26	1.90
352190--352264	31	2.5	31	91	4	118	40	12	20	28	1.87
354821--354859	20	2.0	20	85	10	53	25	28	0	46	1.53
356185--356235	21	2.5	21	81	9	61	39	17	15	27	1.90
356266--356328	19	3.6	19	72	24	66	39	15	12	31	1.85
356284--356341	13	4.0	13	72	23	53	39	13	13	32	1.85
356266--356361	32	3.0	32	89	1	147	39	17	12	30	1.87
361071--361217	32	4.7	32	84	6	167	23	29	16	29	1.96
361072--361185	31	3.7	29	88	8	147	24	28	17	29	1.97
361172--361703	34	15.6	33	84	8	633	19	33	12	33	1.90
361172--361703	171	3.1	170	84	7	688	19	33	12	33	1.90
361068--361703	34	18.9	34	82	9	555	20	32	13	33	1.91
361708--361807	33	3.0	33	88	5	139	26	38	19	17	1.93
361806--362521	49	14.8	49	84	8	880	25	25	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362053--362477	43	9.1	43	80	14	427	25	25	17	31	1.97
361856--362521	143	4.7	143	92	3	995	25	25	17	30	1.97
363155--363201	17	3.1	17	71	28	59	21	17	34	27	1.95
363411--363477	33	2.0	33	88	0	98	34	11	13	40	1.81
363431--363455	13	1.9	13	100	0	50	36	16	16	32	1.90
363518--363542	13	1.9	13	100	0	50	32	16	16	36	1.90
363551--363671	52	2.3	52	97	0	224	34	18	18	28	1.94
369893--369957	20	3.6	20	73	26	81	27	21	15	35	1.94
369913--369970	13	3.9	13	73	26	53	29	18	15	36	1.92
369893--369970	33	2.4	33	100	0	156	28	20	15	35	1.93
372432--372456	13	1.9	13	100	0	50	32	16	16	36	1.90
372541--372603	33	1.9	32	87	3	90	36	20	14	28	1.92
374530--374571	20	2.0	21	95	4	77	42	23	14	19	1.87
374591--374628	20	1.9	20	88	0	58	42	7	18	31	1.79
374656--374735	33	2.4	33	85	4	108	41	11	13	33	1.80
376642--376670	10	2.7	11	89	10	51	24	10	6	58	1.55
377751--378316	35	15.8	35	75	7	323	22	27	11	38	1.88
377781--378004	115	1.9	116	80	4	256	21	28	12	37	1.90
378482--378838	85	4.2	85	78	8	296	18	22	12	45	1.84
378480--378833	170	2.1	171	78	6	371	18	22	12	45	1.83
382132--382203	20	3.5	21	75	16	71	40	15	13	30	1.86
383603--383655	20	2.7	20	85	5	72	30	20	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384985--385058	20	3.7	20	81	3	103	35	13	20	31	1.91
385003--385078	21	3.7	21	82	3	109	40	11	18	28	1.86
384985--385078	41	2.3	41	100	0	188	38	12	19	29	1.89
385117--385142	13	2.0	13	100	0	52	38	15	15	30	1.88
385600--385666	37	1.9	35	88	11	102	32	11	25	29	1.92
388825--388849	13	1.9	13	100	0	50	36	16	16	32	1.90
390656--390729	20	3.7	20	81	3	103	35	13	20	31	1.91
390674--390749	21	3.7	21	82	3	109	40	11	18	28	1.86
390656--390749	41	2.3	41	100	0	188	38	12	19	29	1.89
390788--390813	13	2.0	13	100	0	52	38	15	15	30	1.88
391271--391337	37	1.9	35	88	11	102	32	11	25	29	1.92
393560--393584	13	1.9	13	100	0	50	32	16	16	36	1.90
393572--393624	20	2.6	21	84	3	72	39	15	16	28	1.89
393677--393702	13	2.0	13	100	0	52	30	15	15	38	1.88
393657--393724	33	2.1	32	91	2	109	35	19	13	32	1.90
399454--399494	21	2.0	21	85	9	57	39	12	9	39	1.76
399534--399603	20	3.6	19	77	9	70	40	17	12	30	1.87
401603--401634	11	2.9	11	100	0	64	18	0	25	56	1.42
401698--401722	13	1.9	13	100	0	50	36	16	16	32	1.90
402491--402583	46	2.0	46	100	0	186	32	4	30	33	1.77
403406--403446	21	2.0	21	85	9	57	39	12	9	39	1.76
403486--403556	20	3.6	19	77	7	70	40	16	12	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403526--403662	53	2.6	53	94	1	238	37	18	16	27	1.92
403694--403752	22	2.6	23	86	5	75	28	23	11	35	1.91
407443--407467	13	1.9	13	100	0	50	32	16	16	36	1.90
407455--407507	20	2.6	21	84	3	72	39	13	16	30	1.87
407542--407604	33	1.9	32	90	3	99	38	23	12	25	1.90
408456--408506	20	2.6	20	87	3	68	27	13	19	39	1.90
410858--410898	22	2.0	21	86	13	59	41	4	21	31	1.74
411030--411068	13	3.0	13	96	0	69	35	15	17	30	1.91
412557--412581	13	1.9	13	100	0	50	32	16	16	36	1.90
418791--418829	13	3.0	13	88	0	51	33	12	15	38	1.85
420633--420676	22	2.0	22	82	4	54	25	6	29	38	1.81
421322--421372	20	2.6	20	87	9	70	41	17	13	27	1.87
426693--426736	22	2.0	22	95	0	79	38	18	6	36	1.77
428494--428532	13	3.0	13	96	0	69	35	15	17	30	1.91
432533--432558	13	2.0	13	100	0	52	30	15	15	38	1.88
432513--432576	32	2.0	33	87	3	94	28	14	17	40	1.88
434673--434719	23	2.0	24	84	12	62	61	19	4	14	1.49
435614--435773	84	1.9	84	82	7	200	25	19	4	50	1.66
437158--437183	13	2.0	13	100	0	52	30	15	15	38	1.88
437138--437201	32	2.0	33	87	3	94	28	14	17	40	1.88
440504--440562	19	3.0	18	78	14	55	25	11	20	42	1.86
442883--442950	33	2.1	32	86	2	91	33	14	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447983--448034	21	2.5	20	81	6	59	32	15	0	51	1.43
450640--450665	13	2.0	13	100	0	52	38	15	15	30	1.88
454726--454756	15	2.1	15	93	0	53	48	16	22	12	1.80
456827--456863	13	3.0	13	88	11	60	29	16	16	37	1.90
456828--456863	11	3.0	12	88	12	56	30	16	16	36	1.91
459419--459444	13	2.0	13	100	0	52	38	15	15	30	1.88
459499--459536	20	1.9	20	94	0	67	42	13	10	34	1.78
460213--460285	20	3.7	19	83	8	76	30	13	16	39	1.87
460314--460366	20	2.7	20	100	0	106	30	15	18	35	1.92
460355--460379	13	1.9	13	100	0	50	36	16	16	32	1.90
460335--460399	33	2.0	32	88	11	96	33	13	18	33	1.90
462533--462616	19	4.7	19	74	18	81	35	15	17	30	1.91
462553--462616	32	2.0	32	96	0	119	37	14	18	29	1.90
463263--463319	20	2.8	21	81	7	73	38	17	3	40	1.67
465219--465245	13	2.1	13	100	0	54	40	14	14	29	1.86
471477--471526	19	2.6	19	100	0	100	36	16	20	28	1.93
471514--471540	13	2.1	13	100	0	54	40	14	14	29	1.86
475466--475538	13	5.5	13	71	12	51	42	6	23	27	1.79
475497--475553	25	2.2	26	90	3	89	42	7	26	24	1.80
475514--475732	88	2.5	88	98	0	420	40	11	21	26	1.87
475562--475705	49	3.1	49	65	19	146	40	10	19	29	1.85
476581--477175	52	11.2	52	71	12	307	35	15	23	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476582--477238	269	2.5	265	79	4	703	35	15	24	24	1.94
476993--477179	101	1.8	101	85	5	259	33	18	22	24	1.97
477191--477278	43	2.0	43	84	0	113	32	19	22	25	1.97
477418--477496	32	2.5	32	85	4	97	22	16	30	30	1.96
479100--479175	13	6.2	12	81	17	77	0	0	17	82	0.66
479107--479175	12	5.5	13	77	16	67	0	0	15	84	0.63
479121--479175	19	2.9	19	89	5	85	0	0	16	83	0.64
480264--480538	79	3.5	79	80	3	302	30	12	25	31	1.93
483172--483358	88	2.1	88	93	0	329	41	12	20	25	1.87
485380--485404	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8