genome.fa.s462.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold462
Parameters: 2 7 7 80 10 50 1000
Length:  1234098

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050079--1050104	13	2.0	13	100	0	52	30	15	15	38	1.88
1050871--1051031	76	2.1	76	97	0	304	24	21	13	40	1.89
1051183--1051226	21	2.1	21	83	8	54	25	31	4	38	1.76
1053032--1053070	13	3.0	13	96	0	69	35	15	15	33	1.89
1055148--1055178	15	2.1	15	93	0	53	12	22	16	48	1.80
1056982--1057026	21	2.1	21	84	8	56	22	20	4	53	1.63
1059245--1059270	13	2.0	13	100	0	52	30	15	15	38	1.88
1059821--1065221	158	34.2	156	65	14	893	35	14	19	30	1.91
1059659--1065269	474	11.8	477	83	4	6695	35	14	19	30	1.91
1066900--1066975	12	6.9	11	75	15	52	39	2	48	9	1.49
1066899--1066984	24	3.8	24	72	17	85	41	2	45	10	1.51
1066890--1067008	42	2.8	42	90	0	184	43	2	45	8	1.47
1071426--1073120	472	3.6	475	84	3	2153	35	14	18	30	1.91
1073115--1074982	476	3.9	474	83	3	2227	36	13	18	31	1.90
1073115--1074979	952	2.0	951	85	2	2515	36	13	18	31	1.90
1074700--1075274	292	1.9	295	86	6	815	35	14	18	31	1.91
1075006--1079264	476	9.0	471	84	5	4878	35	13	18	31	1.90
1076478--1078525	159	12.9	159	67	12	454	36	13	18	31	1.90
1077568--1078731	159	7.3	158	67	13	478	36	13	18	31	1.90
1079963--1081670	475	3.6	473	83	3	2144	35	13	19	31	1.91
1088845--1088951	21	5.3	18	65	30	56	10	47	1	40	1.48
1088848--1088966	42	2.8	42	93	0	193	9	45	1	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088881--1088956	12	6.9	11	75	15	52	9	47	2	40	1.49
1090584--1092401	475	3.8	475	83	3	2207	35	14	19	30	1.92
1094205--1094265	9	7.1	9	72	10	56	11	44	1	42	1.50
1094210--1094244	12	2.9	12	84	16	54	11	48	0	40	1.39
1094177--1094295	42	2.8	42	90	0	184	9	46	1	42	1.46
1094201--1094286	24	3.8	24	73	17	85	11	45	1	41	1.48
1099762--1101616	476	3.9	475	81	4	2001	35	13	18	32	1.90
1102359--1102411	20	2.7	20	88	11	74	33	18	15	32	1.92
1113827--1113887	9	7.1	9	74	10	65	13	44	0	42	1.43
1113832--1113908	12	6.9	12	77	19	71	12	46	0	40	1.42
1113799--1113917	42	2.8	42	93	0	193	10	45	0	42	1.45
1114647--1114693	20	2.3	20	85	0	58	6	14	4	74	1.17
1114830--1116044	606	2.0	606	95	1	2206	36	22	15	25	1.93
1116038--1116219	92	2.0	92	92	0	301	14	29	15	40	1.87
1117855--1117879	13	1.9	13	100	0	50	32	16	16	36	1.90
1118002--1118055	20	2.6	20	88	5	72	44	14	12	27	1.82
1118677--1118711	15	2.3	15	95	0	61	42	0	28	28	1.56
1127624--1127649	13	2.0	13	100	0	52	30	15	15	38	1.88
1130025--1130071	21	2.3	21	76	23	55	42	4	19	34	1.70
1130192--1130230	13	3.0	13	96	0	69	35	15	17	30	1.91
1130216--1130294	20	3.7	20	78	15	77	44	15	15	25	1.85
1132270--1132300	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134104--1134148	21	2.1	21	84	8	56	22	20	4	53	1.63
1136750--1138447	476	3.6	474	83	3	2052	32	18	13	35	1.90
1139227--1139959	365	2.0	365	98	0	1430	30	17	17	34	1.93
1142138--1142192	20	2.8	19	88	5	74	41	16	12	29	1.85
1142245--1142308	20	3.7	18	74	25	66	43	15	12	28	1.83
1142263--1142288	13	2.0	13	100	0	52	38	15	15	30	1.88
1142245--1142308	32	2.0	33	93	3	112	43	15	12	28	1.83
1142746--1142812	37	1.9	35	88	11	102	32	11	25	29	1.92
1147550--1147613	20	3.7	18	74	25	66	43	15	12	28	1.83
1147568--1147593	13	2.0	13	100	0	52	38	15	15	30	1.88
1147550--1147613	32	2.0	33	93	3	112	43	15	12	28	1.83
1148051--1148117	37	1.9	35	88	11	102	32	11	25	29	1.92
1152104--1152281	31	5.6	31	78	8	153	23	26	15	34	1.94
1152104--1152281	33	5.5	33	79	7	179	23	26	15	34	1.94
1152310--1152616	33	9.9	32	76	11	205	20	31	13	34	1.91
1152312--1152529	66	3.4	66	80	8	236	20	32	12	34	1.90
1152262--1152588	27	11.0	27	70	19	143	21	32	13	33	1.92
1152342--1152561	61	3.6	60	77	10	194	20	31	11	35	1.89
1152505--1152617	27	4.0	27	77	13	118	23	30	14	31	1.94
1152378--1152621	88	2.7	88	82	5	292	20	31	13	34	1.91
1152595--1152689	29	3.3	29	82	8	106	33	31	16	17	1.93
1152706--1153134	49	8.8	49	78	9	391	25	25	17	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1152855--1153086	48	4.7	48	80	5	266	26	27	17	29	1.97
1152848--1153086	100	2.4	97	86	3	327	26	27	17	29	1.97
1153686--1153748	19	3.6	19	76	24	84	33	11	19	36	1.87
1153686--1153765	32	2.5	32	93	2	135	33	11	18	36	1.87
1157418--1157443	13	2.0	13	100	0	52	38	15	15	30	1.88
1157400--1157463	32	2.0	33	87	3	94	39	17	14	29	1.88
1158919--1158958	13	3.1	13	81	0	53	35	17	12	35	1.88
1160410--1160473	33	1.9	33	90	0	101	26	29	17	26	1.97
1161405--1161431	13	2.1	13	100	0	54	29	14	14	40	1.86
1161416--1161471	19	2.8	20	91	2	87	30	16	16	37	1.90
1161412--1161477	20	3.4	19	83	8	89	33	13	16	36	1.88
1162886--1163185	151	2.0	151	89	1	458	32	15	10	42	1.81
1162417--1163661	627	2.0	627	86	2	1750	32	17	12	37	1.87
1163037--1165382	951	2.5	947	82	5	2891	32	18	13	36	1.89
1163037--1165380	475	4.9	475	82	3	2753	32	18	13	36	1.89
1165414--1167878	919	2.6	926	82	4	3091	31	18	13	36	1.90
1166126--1167878	473	3.7	474	84	4	2233	31	18	13	36	1.90
1167185--1167983	160	5.1	157	70	10	431	32	17	13	37	1.88
1167730--1168029	151	2.0	151	92	0	501	33	16	10	39	1.83
1168911--1168973	33	1.9	33	83	6	83	33	15	14	36	1.88
1169003--1169095	20	4.7	19	78	15	82	38	16	15	30	1.89
1169557--1172220	159	16.8	158	65	13	658	31	18	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169365--1172444	475	6.5	474	82	3	3281	31	18	13	35	1.90
1169369--1172444	950	3.2	941	82	4	3627	31	18	13	35	1.90
1172022--1172867	422	2.0	421	81	4	999	31	19	13	35	1.91
1172443--1173378	478	2.0	474	81	6	1090	30	19	13	36	1.91
1171567--1174125	904	2.8	890	84	5	3046	31	19	13	35	1.90
1173388--1175317	475	4.1	472	79	7	1753	32	18	13	35	1.90
1175609--1182448	476	14.3	476	76	7	4724	31	18	13	35	1.90
1182361--1182532	86	2.0	86	91	0	281	27	18	17	36	1.93
1182452--1185969	475	7.4	472	81	4	3683	32	17	14	36	1.90
1186802--1186936	50	2.7	50	82	6	175	29	17	13	40	1.87
1189251--1189303	28	1.9	28	88	11	83	32	16	16	33	1.92
1189300--1189546	79	3.1	79	81	1	271	27	22	14	35	1.93
1195746--1196322	62	9.4	62	80	8	617	24	25	19	29	1.98
1196305--1197073	42	18.1	42	75	8	533	20	26	12	40	1.88
1196332--1197073	86	8.8	86	77	7	603	19	26	12	41	1.87
1196509--1196740	119	1.9	120	83	7	303	21	25	11	41	1.86
1196332--1197073	163	4.4	168	75	8	494	19	26	12	41	1.87
1196631--1197073	43	10.4	41	77	6	323	19	26	11	41	1.86
1197924--1198049	50	2.5	50	83	2	137	27	19	13	39	1.89
1200484--1200650	51	3.3	50	89	3	244	29	20	11	37	1.89
1200536--1200788	130	2.0	129	82	3	312	29	22	11	36	1.90
1200664--1200774	51	2.2	51	85	0	141	31	20	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1200718--1200885	79	2.1	79	82	2	194	28	21	14	35	1.92
1200844--1200897	28	1.9	28	84	0	72	20	29	18	31	1.96
1203205--1203245	21	2.0	21	86	9	59	21	19	9	48	1.77
1206480--1207606	159	7.1	159	67	12	472	33	18	13	35	1.89
1205886--1206743	430	2.0	429	81	3	1019	32	18	12	36	1.89
1206322--1207895	477	3.3	472	84	4	1929	32	18	12	36	1.88
1207904--1209803	476	4.0	475	81	4	2157	31	18	13	36	1.90
1209421--1210196	393	2.0	392	83	5	1003	31	19	12	36	1.89
1210348--1211555	474	2.5	473	80	6	1352	31	17	13	37	1.88
1211170--1211956	393	2.0	392	82	6	955	31	19	13	36	1.90

Tables:   1   2   3   4   5   6   7   8