genome.fa.s468.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold468
Parameters: 2 7 7 80 10 50 1000
Length:  1127621

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 750 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320091--320258	71	2.4	71	89	2	248	43	10	16	29	1.81
320191--320248	20	2.9	21	92	5	93	43	12	15	29	1.83
321344--321374	11	2.8	11	95	0	53	9	51	16	22	1.73
322357--322397	21	2.0	21	95	0	73	21	14	26	36	1.93
331840--331865	9	2.9	9	100	0	52	53	0	34	11	1.37
335030--336135	368	3.0	370	86	7	1494	36	11	15	36	1.84
335856--335897	21	2.0	22	90	4	68	26	0	7	66	1.17
341122--341386	79	3.4	79	77	11	249	33	14	26	25	1.94
341319--341485	51	3.3	51	83	3	219	35	10	23	29	1.89
341378--341614	130	1.8	129	88	2	359	38	13	20	27	1.89
341258--341617	181	2.0	180	80	4	404	36	13	22	27	1.91
341507--341630	50	2.5	50	86	1	167	41	13	19	25	1.88
345131--345155	13	1.9	13	100	0	50	36	16	16	32	1.90
345222--345284	13	4.9	13	79	15	69	31	15	19	33	1.93
345222--345287	25	2.6	24	86	11	80	30	15	21	33	1.94
345743--345835	36	2.8	33	82	12	109	32	12	23	31	1.92
346690--346716	12	2.2	12	100	0	54	51	25	7	14	1.68
347376--347431	21	2.6	22	78	15	64	55	3	23	17	1.58
348732--348800	33	2.1	34	86	13	99	34	15	13	36	1.87
348827--348900	19	3.7	19	87	5	85	36	18	16	28	1.93
349421--349503	39	2.1	39	81	6	94	26	31	2	39	1.69
351332--351360	13	2.2	13	100	0	58	41	17	13	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357518--357581	33	1.9	33	87	12	96	31	15	14	39	1.87
361190--361223	3	11.3	3	93	0	59	29	32	0	38	1.58
362308--363565	634	2.0	634	99	0	2507	33	15	17	34	1.90
363564--363588	13	1.9	13	100	0	50	36	16	16	32	1.90
363546--363609	33	2.0	33	87	9	96	39	15	15	29	1.89
364353--365204	156	5.5	155	72	8	550	24	16	20	38	1.92
364471--365204	313	2.4	306	78	6	753	24	16	20	38	1.92
376013--376056	17	2.6	18	85	10	65	77	0	6	15	0.97
376013--376054	21	2.0	21	85	0	57	78	0	4	16	0.91
382042--382069	3	9.3	3	100	0	56	35	0	32	32	1.58
383776--383818	22	2.0	22	100	0	86	32	16	13	37	1.88
384937--384962	13	2.0	13	100	0	52	30	15	15	38	1.88
385022--385094	20	3.6	20	81	3	101	31	19	13	35	1.91
385001--385094	41	2.3	41	96	0	170	30	18	12	38	1.88
385001--385076	21	3.7	21	78	3	91	30	17	11	40	1.85
385967--386136	83	2.0	83	100	0	340	24	27	3	44	1.70
390496--390520	13	1.9	13	100	0	50	32	16	16	36	1.90
390562--390634	20	3.6	20	81	3	101	31	19	13	35	1.91
390541--390634	41	2.3	41	96	0	170	30	18	12	38	1.88
390541--390616	21	3.7	21	78	3	91	30	17	11	40	1.85
394687--394743	19	2.9	19	87	5	78	33	14	15	36	1.88
394683--394742	20	3.0	20	82	4	77	33	13	16	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398929--398955	13	2.1	13	100	0	54	29	14	14	40	1.86
398939--398995	19	2.9	19	84	2	78	33	15	15	35	1.90
399040--399070	13	2.4	13	94	0	53	35	16	9	38	1.81
399024--399092	33	2.1	33	89	5	104	31	13	17	37	1.88
407150--407191	22	1.9	22	95	0	75	40	7	33	19	1.78
407785--407811	13	2.1	13	100	0	54	29	14	14	40	1.86
407766--407830	32	2.0	33	90	3	105	29	15	13	41	1.86
407795--407851	19	2.9	19	86	2	78	33	15	15	35	1.90
407896--407948	13	4.5	13	71	26	55	32	13	15	39	1.85
407883--407948	33	2.0	33	88	5	98	31	13	16	37	1.88
410828--410857	14	2.2	13	94	5	51	36	0	0	63	0.95
425955--426009	2	27.5	2	100	0	110	50	0	0	49	1.00
429044--429184	17	8.5	17	70	21	63	37	0	1	60	1.05
429033--429141	56	2.0	55	84	12	143	38	0	1	59	1.08
429069--429184	29	4.1	29	77	14	102	37	0	1	61	1.07
429107--429201	24	4.0	25	77	15	94	37	1	1	60	1.11
429313--429341	2	14.5	2	100	0	58	48	0	0	51	1.00
430041--430106	34	1.9	35	82	11	84	53	1	3	42	1.25
431284--431380	25	4.0	24	72	17	74	55	0	3	41	1.15
431328--431370	23	2.0	22	86	9	61	62	0	2	34	1.08
432830--432883	21	2.6	20	74	8	54	18	27	16	37	1.93
438646--438670	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438711--438777	19	3.8	19	77	22	92	35	17	11	34	1.87
438733--438757	13	1.9	13	100	0	50	32	16	16	36	1.90
438714--438776	32	2.0	32	100	0	126	34	19	12	33	1.89
439465--439656	49	3.7	51	80	4	199	33	16	24	25	1.96
439465--439649	53	3.6	52	79	5	182	32	16	25	24	1.96
447817--447886	20	3.5	20	77	11	72	35	15	15	32	1.90
447856--447908	20	2.6	20	84	3	70	39	15	16	28	1.89
447959--447985	13	2.1	13	100	0	54	29	14	14	40	1.86
449582--449612	9	3.4	9	95	0	53	38	0	35	25	1.56
453943--453968	8	3.2	8	100	0	52	15	0	23	61	1.33
454170--454194	13	1.9	13	100	0	50	32	16	20	32	1.94
456588--456644	20	2.8	20	81	0	60	38	10	15	35	1.82
456646--456698	20	2.6	21	84	3	72	39	15	16	28	1.89
457927--457998	28	2.6	28	88	0	99	23	19	34	22	1.96
457987--458424	51	8.3	52	72	13	301	32	11	25	29	1.92
457988--458427	104	4.2	104	76	8	435	32	11	25	29	1.92
458243--458318	27	2.8	28	88	6	102	21	21	34	23	1.97
460783--460808	13	2.0	13	100	0	52	38	15	15	30	1.88
460762--460828	33	2.0	33	88	0	98	43	16	14	25	1.86
460848--460915	19	3.9	18	76	23	83	38	14	11	35	1.83
460870--460894	13	1.9	13	100	0	50	32	16	16	36	1.90
460851--460913	32	2.0	32	96	0	117	36	15	12	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464620--464645	13	2.0	13	100	0	52	38	15	15	30	1.88
464602--464665	33	2.0	33	90	3	103	40	18	14	26	1.89
467996--468021	13	2.0	13	100	0	52	30	15	15	38	1.88
468060--468132	20	3.6	20	81	9	76	30	16	13	39	1.87
468080--468135	20	2.8	20	89	5	78	30	16	14	39	1.88
468782--468837	27	2.1	27	100	0	112	41	14	3	41	1.63
470424--470470	21	2.3	21	76	23	55	42	4	19	34	1.70
470591--470629	13	3.0	13	96	0	69	35	15	17	30	1.91
470615--470693	20	3.7	20	78	15	77	44	15	15	25	1.85
472709--472739	15	2.1	15	93	0	53	12	22	16	48	1.80
474542--474586	21	2.1	21	84	8	56	22	20	4	53	1.63
476805--476830	13	2.0	13	100	0	52	30	15	15	38	1.88
479394--479468	20	3.8	20	80	0	96	33	13	12	41	1.81
479394--479471	40	2.0	39	89	2	120	33	12	12	41	1.82
479434--479569	51	2.7	51	94	2	229	27	16	11	44	1.82
479394--479519	20	5.8	20	71	21	92	30	15	11	42	1.83
484803--484844	19	2.2	19	87	8	59	52	2	0	45	1.13
492896--493260	79	4.6	79	77	7	314	38	11	21	28	1.88
492918--493216	155	1.9	157	80	6	349	38	11	20	29	1.88
495653--495690	20	1.9	20	94	0	67	26	18	7	47	1.76
495733--495783	20	2.5	21	87	3	68	29	19	11	39	1.87
502186--502215	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502486--502515	2	15.0	2	100	0	60	50	0	0	50	1.00
521431--521474	18	2.3	20	84	7	56	47	0	4	47	1.22
521377--521498	19	6.8	18	68	21	69	40	0	4	53	1.28
521377--521564	69	2.8	66	80	7	198	42	2	5	50	1.38
521438--521748	87	3.6	86	78	8	251	40	2	8	49	1.46
521507--521573	20	3.4	20	76	10	57	41	1	5	50	1.36
521553--521609	27	2.0	28	87	12	82	40	3	8	47	1.52
521679--521748	20	3.6	19	78	5	59	37	0	11	51	1.38
521965--522127	19	8.0	20	73	14	88	37	0	8	53	1.31
521972--522040	20	3.7	18	77	12	68	37	0	7	55	1.28

Tables:   1   2   3   4   5   6   7