genome.fa.s468.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold468
Parameters: 2 7 7 80 10 50 1000
Length:  1127621

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 750 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
890343--890381	14	2.9	14	92	3	62	23	2	0	74	0.94
891919--892537	167	3.7	166	86	4	827	51	9	8	30	1.65
891930--892648	333	2.2	332	82	5	837	51	9	8	30	1.64
894186--894250	19	3.8	18	75	24	77	32	12	16	38	1.86
894207--894231	13	1.9	13	100	0	50	36	16	16	32	1.90
894188--894258	32	2.2	32	97	0	133	32	12	18	36	1.88
898933--898984	20	2.6	20	87	0	77	34	11	13	40	1.81
899879--899923	21	2.2	20	82	17	58	22	15	17	44	1.86
905023--905075	27	2.1	24	83	13	63	22	32	15	30	1.94
910173--910332	86	1.9	86	84	2	214	41	11	18	28	1.86
913801--913867	33	2.0	33	88	0	98	40	13	11	34	1.81
913823--913847	13	1.9	13	100	0	50	32	16	16	36	1.90
915830--915854	13	1.9	13	100	0	50	24	8	48	20	1.76
916274--916320	20	2.3	20	88	3	67	34	14	8	42	1.77
916282--916325	20	2.2	20	87	4	61	36	13	9	40	1.76
918938--918990	27	2.0	27	84	0	70	54	16	11	16	1.70
920748--920787	20	2.0	20	100	0	80	30	15	25	30	1.95
929407--929464	23	2.5	23	80	0	62	36	13	3	46	1.61
930026--930251	87	2.6	86	78	6	215	31	27	8	31	1.87
931117--931141	13	1.9	13	100	0	50	20	24	24	32	1.98
935438--935493	13	4.4	13	80	15	64	1	19	1	76	0.96
935438--935482	23	1.9	24	90	4	74	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935437--935493	28	2.0	28	83	12	73	1	19	1	77	0.95
939843--939970	52	2.5	52	93	1	213	28	16	17	36	1.92
940029--940158	32	4.0	32	96	1	215	34	16	12	36	1.87
940082--940138	13	3.9	13	76	24	60	33	17	14	35	1.90
946613--946731	42	2.8	42	89	0	175	10	45	1	42	1.47
946652--946721	12	6.4	11	78	17	58	11	48	0	40	1.39
946670--946701	9	3.6	9	91	0	55	12	43	0	43	1.42
949449--949543	19	5.7	18	71	27	84	37	15	12	33	1.86
949442--949543	32	3.2	32	97	0	186	38	15	12	33	1.86
949468--949524	13	3.9	13	76	24	60	35	15	14	35	1.88
950254--950635	165	2.3	165	82	6	429	50	7	12	29	1.69
950323--950636	165	1.9	165	85	5	431	50	7	11	29	1.66
952844--952869	13	2.0	13	100	0	52	30	15	15	38	1.88
955419--955443	13	1.9	13	100	0	50	40	16	16	28	1.89
959350--959394	21	2.1	21	84	8	56	22	20	4	53	1.63
961615--961640	13	2.0	13	100	0	52	30	15	15	38	1.88
961673--961764	40	2.3	39	96	3	166	30	19	13	36	1.90
961673--961764	41	2.3	40	96	3	159	30	19	13	36	1.90
962129--962374	79	3.1	78	76	3	249	28	23	10	37	1.87
966067--966196	51	2.5	51	86	0	188	43	13	13	30	1.82
970069--970098	2	15.0	2	100	0	60	50	0	0	50	1.00
970989--971055	2	33.5	2	84	0	89	41	0	7	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970989--971057	20	3.5	20	93	0	111	40	0	8	50	1.33
971580--971789	106	2.0	106	84	1	278	38	18	7	36	1.78
971881--971939	29	2.0	29	83	0	73	45	3	15	35	1.63
980125--980150	13	2.0	13	100	0	52	30	15	15	38	1.88
982530--982571	19	2.2	19	87	8	59	21	26	0	52	1.47
984876--984921	14	3.3	14	87	0	65	26	19	8	45	1.79
984916--984954	13	3.0	13	76	0	51	33	12	15	38	1.85
986248--986319	37	1.9	37	100	0	144	40	8	25	26	1.83
987101--987141	21	2.0	21	90	0	64	65	0	12	21	1.25
990663--990717	14	4.2	14	73	17	55	21	21	10	45	1.82
990656--990710	24	2.3	24	90	0	92	21	23	10	43	1.84
991280--991318	13	3.0	13	88	0	60	33	10	15	41	1.81
989987--991446	743	2.0	743	94	1	2586	36	13	14	36	1.84
991401--991446	24	1.9	24	95	0	83	21	21	10	45	1.82
994411--994462	11	4.7	11	75	15	54	78	0	19	1	0.84
994406--994460	23	2.4	23	81	3	76	78	0	20	1	0.85
994406--994462	22	2.6	21	81	10	69	77	0	21	1	0.86
995102--995184	29	2.8	28	75	13	78	26	4	18	50	1.66
995371--995572	77	2.6	77	84	2	262	33	14	15	35	1.89
997060--997101	19	2.3	19	87	4	59	33	26	4	35	1.77
997661--997687	3	9.0	3	100	0	54	66	0	0	33	0.92
997941--997987	24	2.0	24	82	0	58	72	0	19	8	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999481--999558	37	2.1	36	92	2	129	43	1	7	47	1.40
1002251--1002302	25	2.1	24	82	10	61	44	3	1	50	1.31
1004478--1004506	14	2.0	15	93	6	51	62	0	0	37	0.96
1004991--1005018	2	14.0	2	100	0	56	50	0	0	50	1.00
1007690--1007975	27	10.7	27	72	14	177	29	7	11	51	1.64
1007708--1007907	55	3.9	51	76	14	162	27	8	10	53	1.64
1007784--1007906	13	9.3	13	65	21	60	27	7	10	54	1.61
1008160--1008198	3	13.0	3	100	0	78	33	0	0	66	0.92
1009354--1009422	33	2.1	33	89	5	104	37	18	11	31	1.87
1009379--1009406	13	2.2	13	100	0	56	39	14	14	32	1.86
1010790--1010824	10	3.5	10	96	0	61	22	31	20	25	1.98
1010846--1010871	13	2.0	13	100	0	52	38	15	15	30	1.88
1010824--1010891	33	2.1	33	86	2	93	33	13	16	36	1.87
1010923--1010975	20	2.6	21	84	3	72	28	16	15	39	1.89
1010963--1010987	13	1.9	13	100	0	50	36	16	16	32	1.90
1012969--1013022	20	2.7	20	82	2	63	11	25	44	18	1.83
1019601--1019664	33	2.0	33	87	3	94	31	6	21	40	1.78
1019689--1019741	20	2.6	21	84	3	72	28	16	15	39	1.89
1019729--1019753	13	1.9	13	100	0	50	36	16	16	32	1.90
1020109--1020282	81	2.1	82	87	1	242	34	21	3	40	1.71
1020208--1020277	24	2.9	25	77	10	74	38	15	4	41	1.67
1022483--1022656	81	2.1	82	88	1	251	33	22	3	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022582--1022651	24	2.9	25	77	10	74	38	15	4	41	1.67
1029000--1029033	9	3.8	9	88	0	50	29	26	0	44	1.55
1030498--1030550	13	4.5	13	71	26	55	35	16	15	32	1.90
1030498--1030566	33	2.1	33	86	5	95	37	18	13	30	1.89
1030594--1030655	19	3.2	20	81	9	74	32	12	16	38	1.86
1030983--1031023	14	2.9	15	82	10	50	75	0	21	2	0.92
1032601--1032625	13	1.9	13	100	0	50	32	16	16	36	1.90
1032613--1032665	20	2.6	21	84	3	72	39	15	16	28	1.89
1032690--1032751	31	2.0	30	90	3	97	38	20	9	30	1.85
1033753--1033790	13	2.9	13	92	0	58	34	15	15	34	1.90
1033817--1033872	19	2.9	19	75	15	60	35	19	16	28	1.93
1033934--1033971	19	2.0	19	94	0	67	18	21	18	42	1.90
1034027--1034069	23	1.9	22	81	13	52	37	9	6	46	1.63
1036181--1036234	27	2.0	27	96	0	99	20	14	27	37	1.92
1036190--1036247	27	2.1	27	81	6	64	22	15	24	37	1.93
1036607--1036640	13	2.6	13	85	0	50	41	11	14	32	1.82
1039583--1039783	79	2.6	79	81	5	221	29	16	28	24	1.97
1039735--1039806	28	2.6	28	88	0	99	23	19	34	22	1.96
1039912--1039993	27	3.0	28	78	10	89	26	20	29	23	1.99
1039984--1040102	51	2.3	53	85	7	154	34	10	21	32	1.89
1042464--1042489	13	2.0	13	100	0	52	38	15	15	30	1.88
1042529--1042596	19	3.9	18	76	23	83	38	14	11	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042551--1042575	13	1.9	13	100	0	50	32	16	16	36	1.90
1042532--1042594	32	2.0	32	96	0	117	36	15	12	34	1.86
1044875--1044924	21	2.3	23	80	16	63	28	18	0	54	1.44
1047952--1048003	20	2.6	20	84	0	59	38	13	19	28	1.89
1048400--1048443	23	1.9	23	86	9	63	34	9	20	36	1.84
1052297--1052322	13	2.0	13	100	0	52	30	15	15	38	1.88
1052277--1052340	32	2.0	33	87	3	94	28	14	17	40	1.88
1052967--1053060	36	2.5	38	81	13	113	32	26	5	35	1.79
1068712--1068749	20	1.9	20	89	10	60	26	0	18	55	1.43
1076669--1076724	13	3.8	13	75	24	58	32	21	8	37	1.84

Tables:   1   2   3   4   5   6   7