Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold54
Parameters: 2 7 7 80 10 50 1000
Length:  3629595

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3542305--3542371
15
4.6
14
75
14
64
61
1
0
37
1.05
3543657--3543696
3
13.3
3
100
0
80
32
0
0
67
0.91
3547793--3547864
24
2.9
26
76
17
80
34
0
0
65
0.93
3547798--3547859
23
2.7
23
83
13
76
35
0
0
64
0.94
3548214--3548270
8
6.9
8
73
15
53
78
0
19
1
0.83
3548212--3548272
26
2.4
27
78
15
76
77
0
19
3
0.91
3549209--3549248
16
2.4
17
88
12
57
37
0
0
62
0.95
3549168--3549240
27
2.7
26
75
8
65
34
1
1
63
1.12
3549295--3549382
27
3.0
29
83
11
92
45
0
0
54
0.99
3551239--3551293
21
2.6
21
70
2
56
52
1
0
45
1.11
3552559--3552596
15
2.4
16
86
8
60
36
0
5
57
1.21
3552665--3552719
23
2.2
25
78
15
69
41
0
3
54
1.18
3552668--3552720
24
2.2
26
86
10
76
43
0
3
52
1.19
3553556--3553633
3
26.3
3
80
17
60
26
1
1
70
1.03
3553568--3553651
43
2.0
43
90
0
132
26
5
1
66
1.21
3553808--3553857
24
2.0
26
85
14
70
48
0
0
52
1.00
3554093--3554129
2
18.5
2
100
0
74
48
0
0
51
1.00
3554775--3554824
11
4.5
11
83
11
57
30
2
0
68
1.01
3554767--3554814
25
2.0
24
87
4
69
29
2
0
68
1.01
3554776--3554812
6
6.5
6
84
9
51
27
2
0
70
1.01
3554776--3554824
17
3.0
17
82
11
50
30
2
0
67
1.02
3554769--3554865
34
2.8
36
77
14
96
36
2
0
61
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3555942--3555987
14
3.5
13
80
14
58
23
0
2
73
0.94
3555945--3555982
7
5.6
7
81
6
51
23
0
2
73
0.95
3555941--3556005
26
2.4
27
75
12
71
30
0
3
66
1.07
3556076--3556126
26
1.9
27
84
4
68
27
0
3
68
1.07
3556349--3556384
18
2.0
18
89
10
56
25
0
2
72
0.98
3557645--3557757
58
1.9
59
83
5
149
30
11
7
50
1.67
3557887--3557931
10
4.3
10
78
10
54
82
0
15
2
0.77
3558777--3558818
22
2.0
22
86
13
61
40
0
0
59
0.97
3559373--3559403
5
6.2
5
100
0
62
61
0
0
38
0.96
3559704--3559755
22
2.5
20
84
12
68
55
0
0
44
0.99
3562173--3562491
176
1.8
177
84
4
437
34
11
16
36
1.86
3566857--3566911
23
2.4
23
90
6
85
29
5
0
65
1.15
3566860--3566911
12
4.5
12
80
7
63
28
5
0
65
1.16
3576177--3576240
13
5.3
13
71
17
57
67
0
1
31
1.00
3576179--3576222
21
2.1
21
95
0
79
75
0
0
25
0.81
3578311--3578335
13
1.9
13
100
0
50
52
0
8
40
1.31
3579794--3579819
3
8.7
3
100
0
52
69
0
30
0
0.89
3581836--3581964
48
2.8
46
81
9
154
17
22
12
48
1.80
3582040--3582069
9
3.3
9
90
0
51
0
56
0
43
0.99
3582065--3582102
3
12.7
3
94
0
67
0
34
2
63
1.09
3585116--3585147
16
2.0
16
100
0
64
18
18
0
62
1.33
3587239--3587287
25
2.0
25
87
0
71
36
2
2
59
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3587273--3587330
22
2.6
23
81
10
66
53
0
0
46
1.00
3588332--3588376
2
22.5
2
100
0
90
51
0
48
0
1.00
3594538--3594581
20
2.2
20
88
8
63
68
0
0
31
0.90
3596071--3596132
32
1.9
32
87
6
90
54
3
1
40
1.26
3598533--3598589
2
28.5
2
92
0
87
50
5
0
43
1.24
3603007--3603031
2
12.5
2
100
0
50
48
0
0
52
1.00
3603929--3604013
36
2.4
36
81
18
90
50
0
2
47
1.14
3603961--3604013
18
2.9
18
78
15
65
49
0
3
47
1.19
3604405--3604440
17
2.1
17
94
0
63
63
0
0
36
0.94
3604405--3604547
18
8.0
17
70
17
78
64
3
0
32
1.10
3604419--3604554
68
2.0
68
98
0
263
61
5
0
33
1.18
3609555--3609582
2
14.0
2
100
0
56
0
0
50
50
1.00
3611301--3611328
13
2.2
13
100
0
56
17
39
14
28
1.89
3618014--3618070
24
2.4
24
90
0
87
26
26
10
36
1.89
3618027--3618071
14
3.5
14
77
22
62
26
31
8
33
1.87
3620456--3620487
12
2.8
12
90
9
50
53
0
0
46
1.00
3625220--3625340
60
2.0
60
96
0
224
22
21
11
44
1.84
3628581--3628613
17
2.0
17
88
5
50
39
0
0
60
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!