genome.fa.s54.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold54
Parameters: 2 7 7 80 10 50 1000
Length:  3629595

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  6  of  20  ( 2342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824508--824536	2	14.5	2	100	0	58	51	0	0	48	1.00
827448--827493	22	2.0	23	88	12	69	36	0	0	63	0.95
827605--827649	17	2.4	19	82	10	58	24	11	4	60	1.49
841160--841224	17	3.8	17	79	6	60	35	0	3	61	1.12
841468--841503	18	2.0	18	94	0	63	38	8	11	41	1.71
844466--844499	16	2.1	16	88	0	50	26	0	0	73	0.83
844731--844769	2	19.5	2	100	0	78	51	0	0	48	1.00
846313--846343	2	15.5	2	93	0	53	54	45	0	0	0.99
848533--848801	144	1.9	144	85	4	382	38	19	17	25	1.93
853302--853354	22	2.4	21	81	9	61	39	0	3	56	1.17
853521--853626	46	2.4	45	79	14	112	36	0	0	62	1.02
853521--853611	49	1.9	46	84	8	121	37	0	0	62	0.95
853614--853646	17	1.9	17	88	11	50	33	0	3	63	1.10
853713--853742	15	1.9	16	93	6	53	66	0	33	0	0.92
859440--859484	4	11.8	4	86	9	67	75	0	24	0	0.80
859437--859486	22	2.3	22	96	0	91	76	0	24	0	0.80
859573--859656	14	5.6	14	74	18	71	34	1	1	63	1.10
859554--859652	25	4.0	25	69	13	60	34	2	1	62	1.13
860179--860243	28	2.4	28	80	7	73	23	1	4	70	1.14
860701--860752	21	2.6	19	82	17	61	50	0	0	50	1.00
860700--860752	26	2.0	27	82	10	65	50	0	0	49	1.00
860858--860912	16	3.4	16	82	9	76	81	1	14	1	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860858--860912	8	6.9	8	79	8	67	81	1	14	1	0.85
861050--861077	13	2.2	13	100	0	56	21	0	0	78	0.75
861148--861207	24	2.5	24	78	8	59	23	0	6	70	1.11
862681--862735	20	2.7	21	78	13	53	40	1	0	58	1.09
863342--863393	27	1.9	27	100	0	104	57	3	9	28	1.48
863538--863582	20	2.3	20	88	11	67	37	0	0	62	0.96
863551--863590	20	2.1	19	85	4	53	47	0	0	52	1.00
863637--863707	22	3.0	22	71	25	63	29	0	7	63	1.21
863982--864020	18	2.2	18	86	9	53	53	0	5	41	1.23
864384--864443	26	2.3	26	80	8	68	50	0	0	50	1.00
864386--864545	88	1.8	87	80	9	191	48	3	0	46	1.24
865421--865456	2	18.0	2	100	0	72	50	0	0	50	1.00
865509--865536	12	2.3	12	100	0	56	35	0	14	50	1.43
870651--870731	37	2.2	36	80	6	83	53	1	0	45	1.08
870788--870844	28	2.0	28	86	10	80	66	0	5	28	1.13
870865--870943	32	2.3	35	79	16	94	54	1	1	43	1.16
871197--871300	21	5.0	21	70	20	67	46	0	0	53	1.00
871333--871373	21	1.9	22	85	5	57	36	2	0	60	1.10
872648--872707	24	2.5	24	89	2	86	45	31	10	13	1.76
873281--873315	16	2.2	16	90	5	54	68	0	17	14	1.21
873650--873691	22	1.9	22	90	0	66	11	26	0	61	1.30
879462--879495	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
880448--880558	58	1.9	58	94	0	195	30	9	17	42	1.81
880659--880710	22	2.4	22	80	6	61	57	1	0	40	1.10
880691--880766	31	2.3	33	80	13	86	56	7	0	35	1.28
892096--892137	16	2.7	15	80	20	50	50	0	0	50	1.00
892574--892606	17	1.9	17	88	11	50	66	3	0	30	1.06
892570--892616	11	4.2	11	81	13	51	63	2	0	34	1.06
892597--892676	18	4.5	18	74	16	69	56	1	0	42	1.07
892620--892666	14	3.1	14	78	21	58	51	0	0	48	1.00
892556--892677	33	3.7	33	78	11	119	56	1	0	41	1.09
893335--893382	12	4.3	12	77	17	50	64	0	0	35	0.94
894657--894694	20	1.9	20	88	0	58	47	0	0	52	1.00
894710--894753	20	2.3	19	84	4	52	47	2	0	50	1.13
894982--895008	4	6.8	4	100	0	54	22	0	0	77	0.76
895380--895432	26	2.0	27	89	10	83	26	1	16	54	1.53
895936--895967	2	16.0	2	93	0	55	50	3	0	46	1.17
896587--896628	14	2.7	15	78	14	50	40	0	2	57	1.12
896627--896664	16	2.4	16	82	4	51	47	0	0	52	1.00
896611--896657	24	2.0	24	91	4	78	46	0	0	53	1.00
896601--896682	40	2.1	40	86	6	114	47	0	0	52	1.00
900714--900749	18	2.1	17	94	5	63	36	0	0	63	0.94
900742--900789	25	1.9	25	83	8	62	45	2	0	52	1.12
900768--900817	25	2.0	25	84	7	66	42	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900797--900862	31	2.1	31	91	0	105	33	0	0	66	0.92
900797--900860	11	6.0	11	76	7	69	34	0	0	65	0.93
901807--901969	18	8.8	18	65	24	56	37	1	0	60	1.09
912844--912869	2	13.0	2	100	0	52	50	0	50	0	1.00
915215--915248	10	3.4	10	87	0	50	55	2	0	41	1.15
916307--916342	3	12.0	3	100	0	72	0	33	0	66	0.92
916341--916374	3	11.3	3	100	0	68	32	0	0	67	0.91
916422--916458	18	2.0	19	89	5	58	72	0	2	24	0.97
916415--916587	96	1.8	93	81	8	215	50	1	4	43	1.31
916665--916829	69	2.4	66	81	8	188	46	10	3	38	1.57
917369--917415	24	2.0	23	84	12	60	70	2	4	23	1.16
917919--917958	2	20.0	2	89	0	62	2	50	0	47	1.14
918709--918918	50	4.2	50	94	2	359	28	21	19	30	1.98
918709--918904	101	1.9	101	96	0	365	27	21	19	30	1.98
923313--923522	50	4.2	50	94	2	359	28	21	19	30	1.98
923313--923508	101	1.9	101	96	0	365	27	21	19	30	1.98
925840--925884	3	15.0	3	95	0	81	33	2	0	64	1.06
926078--926114	3	12.3	3	100	0	74	64	0	0	35	0.94
926564--926648	12	7.0	11	70	19	53	51	0	0	48	1.00
926564--926659	37	2.6	37	96	1	176	52	0	0	47	1.00
930130--930181	27	2.0	26	82	17	63	50	0	3	46	1.20
930481--930505	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932315--932358	2	22.0	2	90	0	70	45	0	4	50	1.22
932366--932404	14	2.8	14	88	0	51	51	15	2	30	1.57
932350--932402	18	2.9	18	82	0	61	50	18	1	28	1.57
935826--935881	17	3.2	18	80	10	62	46	0	0	53	1.00
935826--935863	19	2.0	18	90	10	58	50	0	0	50	1.00
935826--935871	16	2.6	18	86	10	60	52	0	0	47	1.00
935816--935871	16	3.4	16	75	17	53	57	0	0	42	0.99
937298--937337	21	1.9	21	84	0	53	32	2	30	35	1.71
937664--937741	34	2.3	34	79	2	84	25	1	33	39	1.64
937180--938000	410	2.0	412	90	1	1290	30	6	20	42	1.78
943092--943171	34	2.3	34	80	2	97	21	2	37	38	1.67
943228--943286	31	1.9	31	100	0	118	38	22	15	23	1.92
949073--949103	15	2.1	15	100	0	62	19	6	25	48	1.72
951480--951506	2	13.5	2	100	0	54	0	0	48	51	1.00
957086--957128	11	3.7	11	79	11	50	37	2	2	58	1.24
958111--958151	21	2.0	21	85	9	57	41	0	2	56	1.13
963233--963269	2	18.5	2	100	0	74	48	0	0	51	1.00
963687--963716	2	15.0	2	100	0	60	50	0	50	0	1.00
965120--965147	2	14.0	2	100	0	56	50	0	0	50	1.00
966127--966182	19	2.8	20	78	5	60	62	10	26	0	1.28
966127--966194	20	3.5	20	78	8	68	60	8	29	1	1.36
977478--977502	13	1.9	13	100	0	50	0	12	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979462--979512	22	2.3	23	83	9	72	70	0	0	29	0.87
979460--979516	17	3.4	16	72	13	53	71	0	0	28	0.86
979810--979870	21	3.1	20	81	6	72	44	0	0	55	0.99
985864--986138	81	3.4	80	81	2	309	30	13	30	25	1.94
986613--986722	24	4.4	26	77	20	71	37	0	0	60	1.09
986636--986719	5	16.4	5	75	11	64	35	0	0	64	0.94
986651--986728	11	6.7	11	80	19	88	35	0	0	64	0.94
986665--986728	24	2.7	24	92	4	103	35	0	0	64	0.94
987326--987374	25	2.0	25	91	0	80	44	0	6	48	1.27
988171--988204	16	2.2	15	94	5	59	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20