genome.fa.s60.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold60
Parameters: 2 7 7 80 10 50 1000
Length:  3815296

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  6  of  21  ( 2419 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738602--738628	2	13.5	2	100	0	54	51	0	48	0	1.00
742486--742531	15	3.4	14	82	11	60	60	0	0	39	0.97
742474--742533	18	3.2	18	81	11	59	61	1	0	36	1.06
742597--742627	15	2.1	15	93	0	53	61	0	0	38	0.96
742667--742732	27	2.4	27	87	0	87	46	7	4	40	1.52
743570--743609	20	2.0	20	100	0	80	15	40	5	40	1.68
743637--743818	50	3.6	50	90	0	274	29	19	19	31	1.96
748229--748407	50	3.6	49	87	5	252	29	20	19	30	1.97
749620--749655	19	1.9	18	88	5	54	41	0	0	58	0.98
750032--750141	55	2.0	55	82	3	132	42	17	10	29	1.83
751609--751650	22	2.0	21	86	13	61	66	2	0	30	1.04
755833--755877	15	3.1	15	84	12	58	40	0	0	60	0.97
765322--765470	36	4.1	36	86	3	172	24	0	24	50	1.50
765314--765494	40	4.5	40	84	2	191	25	0	23	49	1.54
765313--765494	44	4.3	44	86	4	214	26	0	23	49	1.54
765400--765472	4	18.2	4	91	0	92	24	0	24	50	1.49
769557--769589	16	2.0	17	94	5	59	21	0	0	78	0.75
769620--769695	27	2.8	27	74	6	73	55	2	0	42	1.14
770357--770394	2	19.0	2	94	0	67	47	0	2	50	1.15
774481--774525	4	11.0	4	81	13	56	46	0	0	53	1.00
774479--774525	17	2.8	17	90	3	69	44	0	0	55	0.99
774539--774580	21	1.9	22	85	9	59	28	0	2	69	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774538--774630	22	4.2	22	67	15	57	36	0	3	60	1.13
776516--776566	21	2.3	21	80	6	57	72	3	1	21	1.11
776817--776856	17	2.3	18	91	4	64	47	0	0	52	1.00
776819--776864	17	2.8	16	81	12	58	52	0	0	47	1.00
777205--777247	21	2.0	22	90	4	70	65	4	2	27	1.25
777213--777273	10	5.6	11	71	9	54	65	3	3	27	1.24
777559--777627	11	5.8	11	75	18	59	63	1	1	33	1.12
777674--777724	22	2.3	22	87	12	70	62	0	0	37	0.95
777683--777743	16	3.9	16	74	6	54	65	1	0	32	1.02
777699--777733	18	1.9	18	94	0	61	68	0	0	31	0.90
777656--777744	24	3.5	25	77	13	85	66	2	0	31	1.04
777684--777749	32	2.1	31	83	13	82	68	1	0	30	0.99
777960--778000	20	2.1	20	86	4	57	43	0	7	48	1.30
779300--779338	19	2.1	18	85	4	51	51	0	0	48	1.00
779626--779665	18	2.3	18	91	4	64	25	0	7	67	1.16
780519--780579	21	2.8	21	77	18	70	37	0	0	62	0.96
780537--780577	18	2.3	18	86	0	55	34	0	0	65	0.93
780519--780569	21	2.2	24	86	10	72	37	0	0	62	0.95
780855--780918	31	2.1	31	88	11	96	45	0	0	54	0.99
780860--780915	16	3.6	15	70	15	51	48	0	0	51	1.00
781023--781062	10	4.3	10	75	18	50	50	0	0	50	1.00
781008--781062	17	3.4	17	76	23	73	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
781023--781077	23	2.2	25	84	12	69	54	0	0	45	0.99
781003--781076	31	2.4	30	82	8	96	52	0	0	47	1.00
783194--783220	1	27.0	1	100	0	54	0	0	0	100	0.00
786944--786981	2	19.0	2	100	0	76	50	0	0	50	1.00
791450--791527	23	3.3	23	74	10	61	58	1	2	37	1.20
791484--791537	16	3.4	16	69	20	51	55	0	0	44	0.99
791466--791558	32	2.9	32	77	15	95	56	0	1	41	1.06
791499--791536	15	2.5	16	79	12	53	57	0	0	42	0.98
792793--793230	49	8.9	49	78	2	396	24	13	18	44	1.85
795091--795130	21	1.9	21	84	0	53	47	0	0	52	1.00
795314--795342	2	14.5	2	100	0	58	51	0	0	48	1.00
823155--823190	2	18.0	2	94	0	63	47	0	2	50	1.15
824379--824421	16	2.7	16	92	0	68	46	6	2	44	1.43
829838--829961	30	4.2	29	72	17	96	37	10	2	50	1.50
829983--830063	29	2.7	30	78	14	87	61	2	1	34	1.17
830259--830324	28	2.5	25	75	17	71	56	1	0	42	1.08
830843--830879	17	2.2	17	90	9	58	48	0	0	51	1.00
830916--830944	14	2.1	14	93	6	51	51	0	0	48	1.00
830954--830987	15	2.5	13	86	13	50	70	0	5	23	1.09
831812--831838	2	13.5	2	100	0	54	51	0	0	48	1.00
833194--833239	22	2.1	22	87	0	65	58	0	0	41	0.98
833207--833291	32	2.7	32	79	1	91	45	2	8	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835040--835078	2	19.5	2	94	0	69	46	0	2	51	1.14
848602--848656	21	2.5	22	76	8	58	50	1	0	47	1.11
848706--848778	10	7.3	10	73	16	53	58	0	0	41	0.98
848642--848784	53	2.7	54	77	16	149	60	0	0	39	0.97
848718--848812	41	2.3	42	82	7	115	56	1	0	42	1.06
848747--848821	10	7.4	10	70	14	55	61	1	0	37	1.05
848713--848832	31	3.9	29	74	13	98	55	0	0	43	1.05
849530--849749	50	4.4	50	86	0	287	31	18	18	31	1.95
849530--849749	100	2.2	101	88	2	327	31	18	18	31	1.95
849803--849909	23	4.7	23	71	14	87	55	0	3	41	1.18
849801--849915	44	2.6	43	71	16	101	56	0	3	40	1.16
849932--850008	38	2.0	38	90	5	120	54	2	0	42	1.14
850131--850431	133	2.3	133	100	0	602	22	21	29	26	1.99
850367--850480	57	2.0	57	98	0	219	29	20	28	21	1.98
855597--855629	3	11.0	3	100	0	66	66	0	0	33	0.92
864319--864349	15	2.1	15	93	0	53	61	3	16	19	1.48
866050--866078	5	6.0	5	96	4	51	17	0	0	82	0.66
866904--866955	26	2.0	26	85	7	70	53	0	1	44	1.11
867945--867991	25	2.0	24	84	12	62	57	0	6	36	1.24
869107--869150	14	3.2	14	77	6	54	47	0	2	50	1.13
869620--869652	17	1.9	18	88	11	52	33	0	0	66	0.92
872754--872803	17	3.0	17	74	11	50	36	0	2	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872763--872838	21	3.5	21	74	13	73	34	0	1	64	1.02
872757--872834	36	2.2	33	82	8	84	33	0	1	65	1.01
873399--873437	15	2.6	15	87	0	51	71	0	2	25	0.98
873526--873573	11	4.7	11	78	21	52	62	0	0	37	0.95
873514--873573	29	2.0	30	87	9	88	61	0	0	38	0.96
874362--874418	11	4.9	11	72	19	53	36	0	0	63	0.95
874344--874419	36	2.1	35	85	9	98	39	0	0	60	0.97
874761--874804	14	3.2	14	81	12	56	56	2	0	40	1.11
874751--874812	28	2.3	26	83	5	79	53	1	0	45	1.10
877675--877706	2	16.0	2	100	0	64	50	0	0	50	1.00
877706--877731	2	13.0	2	100	0	52	50	0	50	0	1.00
880587--880625	13	2.8	13	92	7	60	58	0	0	41	0.98
880822--880860	20	2.0	19	85	5	51	38	5	5	51	1.46
881375--881454	20	4.3	19	72	12	60	46	0	0	53	1.00
881425--881465	12	3.6	12	80	6	50	48	0	0	51	1.00
881425--881512	34	2.5	35	80	9	90	48	1	2	47	1.21
885768--885797	4	7.2	4	96	3	51	50	0	3	46	1.18
886009--886043	19	1.9	19	88	11	56	51	0	0	48	1.00
886493--886539	24	2.0	24	91	0	76	29	0	2	68	1.02
886501--886542	18	2.3	18	95	0	75	33	0	0	66	0.92
886591--886658	14	4.5	14	76	16	55	41	0	2	55	1.15
887039--887091	5	11.2	5	75	18	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887015--887094	37	2.2	37	82	10	94	56	0	0	43	0.99
887018--887176	27	5.4	29	72	18	75	54	0	1	44	1.13
887047--887096	13	3.7	13	77	17	57	54	0	0	46	1.00
887039--887108	9	7.2	10	76	16	60	54	0	1	44	1.09
887038--887169	18	6.9	20	70	24	74	53	0	1	44	1.15
887044--887129	31	2.6	31	83	7	100	52	0	2	45	1.13
887039--887151	27	3.9	27	78	15	102	50	0	1	46	1.17
887682--887752	19	3.9	19	73	12	62	57	0	2	39	1.13
887709--887766	27	2.1	27	84	6	73	56	0	5	37	1.21
889484--889558	37	2.1	37	97	2	143	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21