genome.fa.s61.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold61
Parameters: 2 7 7 80 10 50 1000
Length:  1437555

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1396186--1396253	19	3.9	19	72	21	67	36	13	13	36	1.83
1396309--1396365	21	2.7	21	91	0	96	36	17	10	35	1.84
1397102--1397916	55	13.9	60	85	6	954	25	20	28	26	1.99
1397102--1397914	407	2.0	409	88	3	1199	25	20	28	26	1.99
1404178--1404250	27	2.7	27	86	2	92	20	20	35	23	1.96
1404239--1404357	51	2.3	53	84	7	145	34	11	21	31	1.90
1405248--1405301	25	2.2	25	100	0	108	37	25	18	18	1.94
1406716--1406741	13	2.0	13	100	0	52	38	15	15	30	1.88
1406695--1406761	33	2.0	33	88	0	98	43	16	14	25	1.86
1406781--1406848	19	3.9	18	76	23	83	38	14	11	35	1.83
1406803--1406827	13	1.9	13	100	0	50	32	16	16	36	1.90
1406784--1406846	32	2.0	32	96	0	117	36	15	12	34	1.86
1406904--1406960	21	2.7	21	97	0	105	36	19	10	33	1.86
1407493--1407526	12	2.8	12	90	4	50	8	11	0	79	0.94
1411595--1411677	19	4.7	19	80	17	106	32	12	16	38	1.86
1411614--1411640	13	2.1	13	100	0	54	29	14	14	40	1.86
1411595--1411659	32	2.0	32	96	0	121	32	12	16	38	1.86
1411742--1411870	52	2.5	52	96	0	240	34	17	18	28	1.94
1415501--1415838	170	2.0	171	84	5	452	43	8	7	39	1.64
1417349--1417773	165	2.6	165	79	7	470	49	6	12	32	1.64
1424289--1424346	13	4.0	13	76	23	62	29	13	15	41	1.86
1424269--1424364	32	3.0	32	96	1	174	28	12	15	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1424269--1424364	19	5.6	19	70	28	90	28	12	15	43	1.83
1424416--1424471	20	2.8	20	86	5	69	30	17	14	37	1.90
1426410--1426448	20	1.9	20	84	5	51	10	30	43	15	1.80
1426727--1426773	21	2.3	21	82	10	62	44	4	19	31	1.70
1426894--1426932	13	3.0	13	96	0	69	35	15	17	30	1.91
1430834--1430878	21	2.1	21	84	8	56	22	20	4	53	1.63
1433098--1433123	13	2.0	13	100	0	52	30	15	15	38	1.88
1433078--1433141	32	2.0	33	93	3	112	28	12	15	43	1.83
1433078--1433141	19	3.6	19	72	25	68	28	12	15	43	1.83
1433193--1433248	20	2.8	20	89	5	78	30	16	16	37	1.90
1435848--1435900	20	2.6	21	82	11	58	41	1	3	52	1.30
1436121--1436171	3	17.0	3	91	0	75	60	0	5	33	1.21
1437480--1437518	20	2.0	20	85	10	53	0	51	7	41	1.31

Tables:   1   2   3   4   5   6   7   8   9   10

The End!