genome.fa.s61.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold61
Parameters: 2 7 7 80 10 50 1000
Length:  1437555

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007020--1007094	27	2.7	28	85	2	98	24	33	20	22	1.97
1007116--1007300	52	3.6	49	80	9	190	29	24	11	34	1.91
1007283--1007359	28	2.8	28	86	4	93	23	35	19	22	1.96
1006908--1007408	264	1.9	262	88	4	747	28	26	13	31	1.94
1014935--1014959	13	1.9	13	100	0	50	36	16	16	32	1.90
1015005--1015062	28	2.1	28	93	0	98	39	15	8	36	1.78
1015994--1016024	14	2.2	14	100	0	62	51	0	6	41	1.27
1017176--1017270	42	2.3	43	81	7	106	40	10	13	35	1.79
1018055--1018088	9	3.9	9	92	3	52	20	2	0	76	0.92
1018399--1018457	23	2.4	24	72	16	59	37	1	0	61	1.07
1031708--1031821	52	2.2	52	90	3	176	30	15	15	37	1.89
1031708--1031841	52	2.6	52	82	7	148	31	15	17	35	1.91
1031830--1031854	13	1.9	13	100	0	50	36	16	16	32	1.90
1031918--1031942	13	1.9	13	100	0	50	32	16	16	36	1.90
1031896--1031962	33	2.0	33	88	0	98	40	13	11	34	1.81
1032873--1032940	22	3.1	22	62	26	54	30	17	25	26	1.97
1032806--1033404	49	12.7	49	80	9	662	30	17	26	25	1.97
1032797--1033404	92	6.5	92	90	4	894	30	17	26	25	1.97
1033397--1033738	33	10.6	32	88	5	433	18	17	36	27	1.93
1033404--1033728	99	3.3	99	89	5	480	18	18	35	27	1.94
1033742--1034068	34	9.6	34	91	5	502	32	12	33	21	1.91
1034070--1034308	62	3.9	63	81	13	268	28	17	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1034070--1034307	31	7.7	31	76	10	202	28	17	29	25	1.97
1035299--1035419	52	2.3	52	95	0	215	28	19	18	33	1.95
1035301--1035439	52	2.7	51	88	4	199	30	17	18	32	1.95
1035428--1035452	13	1.9	13	100	0	50	36	16	16	32	1.90
1035493--1035562	33	2.1	33	89	0	104	40	14	11	34	1.82
1035518--1035542	13	1.9	13	100	0	50	32	16	16	36	1.90
1039007--1039038	3	10.7	3	100	0	64	68	0	0	31	0.90
1041015--1041074	19	3.2	19	88	11	88	35	18	13	33	1.89
1041063--1041087	13	1.9	13	100	0	50	40	16	20	24	1.91
1041044--1041105	33	1.9	32	90	3	97	38	16	17	27	1.91
1043864--1043888	13	1.9	13	100	0	50	84	0	0	16	0.63
1044515--1044545	16	2.0	15	93	6	53	77	3	0	19	0.90
1061840--1061884	20	2.3	20	88	3	65	35	15	11	37	1.83
1061834--1061884	19	2.6	19	84	3	66	33	15	11	39	1.84
1068273--1068967	59	11.5	61	87	3	860	25	27	19	27	1.99
1068978--1069154	75	2.3	75	81	2	212	19	23	16	40	1.91
1072806--1072926	52	2.3	52	89	0	197	29	16	17	36	1.92
1072806--1072946	52	2.7	52	82	4	160	30	16	18	34	1.93
1073023--1073047	13	1.9	13	100	0	50	32	16	16	36	1.90
1073001--1073067	33	2.0	33	88	0	98	40	13	11	34	1.81
1073911--1074509	49	12.7	49	81	9	689	30	18	26	25	1.98
1073902--1074509	92	6.5	92	91	4	930	30	17	26	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074502--1074844	33	10.6	32	88	5	435	18	17	36	27	1.93
1074848--1075174	34	9.6	34	92	4	509	32	12	34	20	1.90
1075217--1075384	30	5.4	31	73	16	103	29	16	29	25	1.96
1075217--1075384	62	2.7	62	86	8	216	29	16	29	25	1.96
1083588--1083708	52	2.3	52	91	0	197	28	17	16	37	1.92
1083588--1083728	52	2.7	52	83	4	169	29	17	17	35	1.93
1083717--1083741	13	1.9	13	100	0	50	36	16	16	32	1.90
1083805--1083829	13	1.9	13	100	0	50	32	16	16	36	1.90
1083783--1083849	33	2.0	33	88	0	98	40	13	11	34	1.81
1086533--1086602	28	2.5	28	86	4	88	24	31	17	27	1.97
1086561--1086809	79	3.2	78	89	3	358	28	25	13	33	1.93
1086593--1086809	78	2.8	78	86	6	298	29	25	11	33	1.91
1086748--1086859	51	2.2	51	93	0	188	29	25	11	33	1.91
1086797--1087143	79	4.4	78	82	5	340	28	25	12	32	1.93
1086670--1086940	130	2.1	129	89	2	409	28	26	11	33	1.92
1086796--1087157	158	2.3	158	82	4	444	28	24	12	33	1.92
1089793--1089926	12	11.1	12	70	10	87	42	2	2	52	1.26
1089794--1089844	26	2.0	26	88	7	77	43	0	1	54	1.11
1089793--1089845	13	4.1	14	72	18	53	41	0	1	56	1.10
1090529--1090571	20	2.2	20	87	8	61	6	11	23	58	1.57
1090841--1090904	32	2.0	33	87	3	94	37	14	17	31	1.89
1091635--1091771	68	2.0	69	94	1	240	27	25	5	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091886--1091958	39	1.9	38	86	5	103	50	15	12	21	1.76
1092052--1092083	12	2.7	12	95	0	55	31	21	9	37	1.85
1093018--1093045	13	2.2	13	100	0	56	35	14	17	32	1.90
1096400--1096432	15	2.2	15	100	0	66	33	12	21	33	1.90
1097054--1097079	13	2.0	13	100	0	52	38	15	15	30	1.88
1099288--1099332	21	2.1	21	84	8	56	53	4	20	22	1.63
1101136--1101166	15	2.1	15	93	0	53	48	16	22	12	1.80
1109157--1109221	33	2.0	33	87	0	94	33	20	13	32	1.91
1117123--1117186	32	2.0	33	87	3	94	42	15	10	31	1.82
1117544--1117594	13	4.0	12	74	18	50	45	1	3	49	1.32
1117533--1117594	26	2.4	27	81	5	65	43	1	4	50	1.33
1117898--1117977	40	2.0	40	87	2	115	46	11	7	35	1.68
1121172--1121249	37	2.1	39	80	9	90	48	12	12	25	1.77
1121488--1121590	47	2.2	47	94	0	179	48	10	13	27	1.75
1121666--1121704	20	2.0	20	89	0	60	64	12	5	17	1.46
1123779--1123819	15	2.7	15	88	0	64	36	14	2	46	1.58
1127444--1127497	20	2.7	20	91	5	83	37	18	12	31	1.89
1127547--1127571	13	1.9	13	100	0	50	32	16	16	36	1.90
1127528--1127592	33	2.0	32	87	3	94	36	15	16	30	1.90
1128098--1128296	106	1.9	104	89	10	316	34	20	7	38	1.79
1136454--1136509	19	2.9	19	83	2	67	39	16	14	30	1.88
1136494--1136520	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1137139--1137322	90	2.0	90	98	0	359	39	7	19	33	1.80
1137393--1137432	20	2.0	20	85	4	55	42	20	5	32	1.73
1138111--1138199	35	2.5	35	79	0	106	26	15	16	40	1.89
1152273--1152323	1	51.0	1	94	0	84	96	0	1	1	0.28
1152275--1152322	25	1.9	25	100	0	96	95	0	2	2	0.29
1152271--1152323	27	2.0	27	100	0	106	92	0	3	3	0.46
1152274--1152324	26	2.0	26	100	0	102	94	0	1	3	0.38
1152327--1152383	21	2.7	21	97	0	105	33	10	19	36	1.86
1152438--1152505	19	3.9	19	78	21	85	35	11	14	38	1.83
1152459--1152483	13	1.9	13	100	0	50	36	16	16	32	1.90
1152440--1152502	32	2.0	32	96	0	117	34	12	15	36	1.86
1152545--1152570	13	2.0	13	100	0	52	30	15	15	38	1.88
1152525--1152591	33	2.0	33	88	0	98	25	14	16	43	1.86
1155057--1155129	27	2.7	27	87	6	94	23	34	21	20	1.97
1155112--1155282	51	3.3	51	79	4	198	29	26	11	32	1.92
1154943--1155282	105	3.2	105	69	12	273	30	26	11	31	1.92
1155265--1155346	28	2.9	28	80	7	87	25	31	15	26	1.96
1156316--1156984	49	13.5	49	79	3	671	31	17	26	25	1.97
1156981--1157267	33	8.8	33	76	10	268	35	13	31	19	1.91
1156981--1157267	34	8.8	33	74	12	225	35	13	31	19	1.91
1156982--1157210	67	3.4	65	80	9	239	36	14	31	17	1.90
1157207--1157491	31	8.9	34	79	11	178	33	14	29	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1157248--1157501	64	4.0	63	86	5	300	32	14	29	23	1.94
1157241--1157491	32	7.9	31	81	6	245	33	14	29	23	1.94
1157248--1157501	125	2.0	127	83	5	327	32	14	29	23	1.94
1158675--1158735	32	1.9	32	83	6	79	1	9	13	75	1.12
1158688--1158749	32	1.9	32	83	6	81	3	8	11	77	1.09
1165794--1165848	20	2.8	20	88	5	76	40	12	14	32	1.84
1168113--1168146	14	2.3	15	90	10	52	14	2	0	82	0.79
1175406--1175495	32	2.9	31	93	3	153	34	14	15	35	1.88
1175440--1175496	13	4.0	13	77	20	60	35	15	15	33	1.90
1175423--1175482	18	3.6	18	76	23	76	35	13	16	35	1.88

Tables:   1   2   3   4   5   6   7   8   9   10