Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold64
Parameters: 2 7 7 80 10 50 1000
Length:  7997333

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   

This is table  45  of  45  ( 5312 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7940265--7940310
21
2.2
20
81
11
58
32
19
4
43
1.71
7941987--7942072
38
2.3
39
81
4
95
37
6
25
30
1.82
7942694--7942719
13
2.0
13
100
0
52
38
15
15
30
1.88
7958438--7958481
23
1.9
23
85
0
61
18
4
22
54
1.61
7958444--7958492
23
2.1
23
85
7
64
22
2
26
48
1.61
7959113--7959212
31
3.2
31
80
2
94
44
7
4
45
1.49
7959111--7959182
32
2.3
32
82
2
92
44
5
1
48
1.34
7959111--7959200
31
2.8
32
79
3
101
43
5
3
47
1.43
7961413--7961450
18
2.1
19
85
5
51
71
0
5
23
1.07
7962062--7962101
21
2.0
21
95
5
73
15
10
5
70
1.32
7964288--7964329
21
2.0
21
85
0
57
42
2
2
52
1.27
7964403--7964450
22
2.2
22
81
7
53
50
2
4
43
1.33
7968465--7968515
10
4.6
11
76
13
52
86
0
7
5
0.71
7968468--7968498
16
1.9
16
93
0
53
87
0
9
3
0.66
7968464--7968515
22
2.5
21
85
11
72
84
0
9
5
0.77
7968465--7968504
15
2.7
14
82
14
53
87
0
7
5
0.66
7969438--7969471
2
17.0
2
100
0
68
50
0
0
50
1.00
7969978--7970263
151
1.9
150
93
0
491
33
17
13
35
1.89
7970164--7970398
78
3.0
77
78
6
222
36
14
9
39
1.79
7971775--7971814
2
20.0
2
100
0
80
50
0
0
50
1.00
7973603--7973758
82
1.9
82
87
0
231
42
16
7
33
1.77
7975357--7975395
3
13.0
3
94
0
69
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7978630--7978680
23
2.2
23
82
3
57
52
0
1
45
1.12
7978922--7979007
29
2.9
29
77
16
88
51
1
3
44
1.26
7980426--7980464
17
2.4
16
87
8
53
43
5
0
51
1.24
7980432--7980464
17
1.9
17
93
0
57
39
6
0
54
1.25
7982889--7982941
25
2.2
25
80
16
67
37
5
0
56
1.23
7982885--7982944
24
2.4
25
81
8
70
41
5
0
53
1.23
7989236--7989291
24
2.4
23
82
8
60
50
1
7
41
1.40
7989352--7989383
2
16.0
2
93
0
55
46
0
3
50
1.17
7989581--7989691
37
3.1
37
72
20
99
40
1
0
56
1.16
7989668--7989705
16
2.3
17
86
4
51
47
0
2
50
1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45

The End!