genome.fa.s64.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold64
Parameters: 2 7 7 80 10 50 1000
Length:  7997333

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   

This is table  41  of  45  ( 5312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7250784--7250898	51	2.3	51	83	3	133	31	11	28	28	1.91
7250836--7251355	79	6.6	79	81	5	572	35	13	22	28	1.92
7250836--7251337	236	2.1	236	81	4	591	35	13	22	28	1.93
7262878--7262950	20	3.8	20	78	5	78	35	10	12	41	1.78
7269824--7269875	20	2.3	23	75	24	58	44	0	3	51	1.19
7269830--7269870	20	2.0	21	86	13	59	41	0	2	56	1.13
7269815--7269865	9	5.1	10	77	15	52	45	0	0	54	0.99
7270046--7270603	166	3.4	163	83	3	654	30	9	8	51	1.63
7270046--7270652	167	3.7	162	82	4	626	30	10	8	51	1.64
7272037--7272445	140	2.9	140	86	2	572	35	9	9	45	1.68
7277291--7277497	114	1.8	114	82	4	265	32	18	16	32	1.94
7281580--7281621	21	2.0	21	90	9	68	80	0	14	4	0.86
7285174--7285229	19	2.9	19	86	2	76	39	14	16	30	1.88
7285214--7285240	13	2.1	13	100	0	54	40	14	14	29	1.86
7285226--7285279	20	2.7	20	97	0	99	46	14	12	25	1.81
7285491--7285530	20	2.0	20	85	5	53	22	12	10	55	1.67
7290893--7290976	19	4.7	19	81	18	108	33	11	17	36	1.87
7290933--7290957	13	1.9	13	100	0	50	36	16	16	32	1.90
7290914--7290981	32	2.1	32	97	0	127	33	11	17	36	1.86
7291019--7291043	13	1.9	13	100	0	50	32	16	16	36	1.90
7291052--7291180	52	2.5	52	98	0	249	35	18	17	28	1.93
7292036--7292083	20	2.4	20	100	0	96	20	14	10	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7292036--7292092	20	2.8	20	89	5	62	24	15	10	49	1.76
7296047--7296084	3	12.7	3	88	0	58	28	31	0	39	1.57
7297761--7297851	20	4.7	18	73	15	65	40	14	14	30	1.85
7300976--7301029	28	1.9	28	96	0	99	24	7	16	51	1.69
7303007--7303033	7	3.9	7	100	0	54	59	0	0	40	0.98
7305499--7305557	31	1.9	31	82	6	75	67	1	0	30	1.00
7305517--7305599	19	4.4	18	73	8	58	61	2	0	36	1.09
7305582--7305640	21	2.8	22	74	7	68	50	0	0	49	1.00
7305595--7305670	19	4.2	18	77	12	66	44	0	0	55	0.99
7305614--7305670	17	3.2	18	80	14	73	42	0	0	57	0.98
7306139--7306189	7	7.1	7	80	10	59	45	0	0	54	0.99
7306132--7306188	22	2.6	21	78	18	62	45	0	0	54	0.99
7306132--7306189	15	3.9	15	86	6	82	44	0	0	55	0.99
7306865--7306906	22	1.9	22	90	0	66	61	0	2	35	1.09
7308360--7308399	17	2.3	17	87	12	55	42	2	0	55	1.13
7308581--7308609	13	2.1	14	93	6	51	27	0	10	62	1.28
7308629--7308666	20	2.0	20	84	5	51	50	0	0	50	1.00
7308633--7308677	20	2.2	20	84	7	56	53	0	0	46	1.00
7309645--7309681	2	18.5	2	94	0	65	48	2	0	48	1.15
7309681--7309710	2	15.0	2	100	0	60	50	0	50	0	1.00
7324696--7324733	20	1.9	20	94	0	67	26	10	13	50	1.73
7326357--7326400	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7330236--7330271	18	2.0	18	88	0	54	38	2	0	58	1.13
7330352--7330384	16	2.1	16	94	5	59	39	0	0	60	0.97
7330376--7330443	17	3.7	17	73	22	57	50	1	2	45	1.26
7330376--7330443	10	7.2	10	71	25	51	50	1	2	45	1.26
7330618--7331096	167	2.8	167	74	9	420	43	7	6	42	1.58
7331235--7331295	28	2.1	29	84	3	79	47	1	3	47	1.28
7335549--7335574	13	2.0	13	100	0	52	30	15	15	38	1.88
7335613--7335689	21	3.8	20	79	5	91	29	15	11	42	1.82
7335634--7335706	20	3.6	20	81	3	101	31	19	13	35	1.91
7335613--7335706	41	2.3	41	96	0	170	30	17	12	39	1.87
7336326--7336389	31	2.1	31	100	0	128	42	25	3	29	1.70
7338179--7338217	13	3.0	13	96	0	69	35	15	17	30	1.91
7338203--7338281	20	3.7	20	75	18	70	45	15	13	25	1.83
7339565--7339595	15	2.1	15	93	0	53	12	22	16	48	1.80
7343657--7343682	13	2.0	13	100	0	52	30	15	15	38	1.88
7343721--7343797	21	3.8	20	79	5	91	29	15	11	42	1.82
7343742--7343834	20	4.6	20	81	5	107	31	17	13	37	1.89
7343721--7343814	41	2.3	41	96	0	170	30	17	12	39	1.87
7350921--7350995	20	3.8	20	80	3	80	40	12	13	34	1.81
7350918--7350995	40	2.0	39	87	2	111	39	12	12	34	1.82
7352152--7352184	14	2.4	14	94	0	57	48	18	3	30	1.63
7353466--7353497	16	2.0	16	93	0	55	46	6	15	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7354252--7354293	6	7.0	6	94	0	66	33	38	16	11	1.86
7355973--7356000	14	2.0	14	100	0	56	71	0	0	28	0.86
7356570--7356615	24	2.0	23	83	12	58	43	6	2	47	1.41
7357019--7357179	88	1.8	88	91	2	270	49	9	2	39	1.49
7357987--7358016	2	15.0	2	100	0	60	50	0	0	50	1.00
7358480--7358618	65	2.1	65	97	0	260	36	15	5	41	1.71
7359193--7359232	2	20.0	2	100	0	80	50	0	0	50	1.00
7360154--7360179	9	2.9	9	100	0	52	0	7	0	92	0.39
7362372--7362559	95	2.0	95	92	0	313	29	17	18	35	1.93
7363173--7363228	13	4.0	14	78	15	62	51	0	0	48	1.00
7363313--7363377	21	3.3	21	75	12	75	49	0	1	49	1.10
7363318--7363387	10	7.3	10	83	13	76	52	0	1	45	1.09
7363347--7363382	17	2.1	17	94	0	63	55	0	0	44	0.99
7366999--7367069	28	2.5	28	90	0	106	25	30	15	28	1.96
7367025--7367245	79	2.8	78	80	2	255	28	23	14	33	1.93
7366937--7367141	107	1.9	106	83	3	259	28	24	13	33	1.93
7366887--7367228	185	1.8	186	82	3	438	28	23	12	35	1.92
7367025--7367270	79	3.1	79	79	5	230	28	23	13	34	1.93
7369905--7369929	13	1.9	13	100	0	50	36	16	16	32	1.90
7369992--7370016	13	1.9	13	100	0	50	32	16	16	36	1.90
7370005--7370103	52	1.9	52	91	4	164	30	20	16	33	1.94
7375920--7376048	52	2.5	52	93	0	222	29	17	17	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7376126--7376209	13	5.5	13	68	28	51	36	17	11	33	1.87
7376134--7376196	19	3.7	18	76	24	73	38	17	11	33	1.85
7376126--7376212	32	2.7	32	92	0	156	39	17	11	32	1.85
7376907--7377078	55	3.2	55	75	8	208	36	14	26	22	1.93
7376877--7377836	43	19.6	51	76	12	744	32	17	25	23	1.97
7376877--7377117	107	2.3	107	95	0	428	34	16	26	23	1.95
7377082--7377836	43	15.8	49	79	12	781	31	18	25	23	1.97
7377131--7377836	144	5.0	142	84	9	791	32	18	25	23	1.97
7377609--7377675	21	3.1	21	62	26	50	26	17	29	25	1.98
7377567--7377836	92	3.0	91	90	3	406	30	18	25	25	1.98
7377827--7377914	33	2.7	31	79	10	104	28	18	28	25	1.98
7377902--7378172	30	9.0	29	75	9	238	29	17	28	23	1.97
7377890--7378172	61	4.7	61	88	2	358	29	17	28	24	1.97
7377890--7378172	121	2.3	122	84	4	376	29	17	28	24	1.97
7386351--7386478	52	2.5	52	90	1	204	30	17	16	35	1.93
7386351--7386496	52	2.8	52	87	3	170	31	17	17	34	1.93
7386535--7386567	13	2.5	13	100	0	66	33	18	15	33	1.92
7387237--7388007	49	15.7	52	76	11	362	32	17	25	24	1.97
7387241--7387469	52	4.3	54	75	8	209	36	16	24	23	1.94
7387237--7387474	107	2.2	107	94	0	413	35	16	24	23	1.95
7387442--7388007	49	11.9	49	78	11	595	31	18	25	24	1.97
7387591--7388006	43	9.1	43	78	12	445	30	17	26	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7387442--7388006	92	6.0	92	90	3	779	31	18	25	24	1.97
7388007--7388082	33	2.3	33	84	4	109	26	19	28	25	1.99
7388070--7388280	30	7.0	30	78	12	211	28	18	28	24	1.98
7388058--7388281	61	3.7	61	87	3	285	28	17	29	24	1.97
7388058--7388285	31	7.5	30	79	10	230	29	17	29	24	1.97
7391279--7391308	13	2.3	13	100	0	60	30	16	13	40	1.87
7393176--7393200	13	1.9	13	100	0	50	32	8	16	44	1.76
7395534--7395659	50	2.5	50	85	3	164	27	23	11	37	1.90
7395597--7395892	79	3.8	78	82	10	320	30	23	12	33	1.91
7398486--7398548	19	3.7	18	70	24	55	33	9	17	39	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45