genome.fa.s70.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold70
Parameters: 2 7 7 80 10 50 1000
Length:  1110102

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372402--372582	52	3.5	52	91	0	281	34	18	17	29	1.94
376578--376629	20	2.6	20	78	6	61	42	9	13	34	1.77
379793--379843	20	2.6	20	84	9	61	29	15	13	41	1.86
380633--380725	20	4.7	20	100	0	186	30	15	20	34	1.93
380795--380820	13	2.0	13	100	0	52	38	15	15	30	1.88
380777--380841	32	2.0	32	87	6	94	43	15	13	27	1.85
383986--384010	13	1.9	13	100	0	50	36	16	16	32	1.90
383967--384029	32	2.0	32	93	0	108	34	12	15	36	1.86
383966--384035	19	4.0	19	77	21	80	35	11	14	38	1.82
384072--384096	13	1.9	13	100	0	50	36	16	16	32	1.90
384053--384116	33	1.9	33	87	0	92	28	15	17	39	1.90
386571--386740	52	3.3	52	79	9	170	29	24	12	33	1.92
386724--386800	28	2.8	28	87	0	100	23	33	19	23	1.97
386754--386955	76	2.6	78	79	5	214	25	30	16	28	1.97
389159--389189	15	2.1	15	93	0	53	48	16	22	12	1.80
391267--391304	13	2.9	13	96	0	67	34	18	15	31	1.92
393859--393884	13	2.0	13	100	0	52	38	15	15	30	1.88
393841--393905	32	2.0	32	87	6	94	43	15	13	27	1.85
395572--395759	35	5.7	35	81	9	184	30	25	12	31	1.92
395628--395760	67	2.0	63	83	8	160	31	26	10	31	1.90
399479--399591	50	2.2	51	85	4	149	40	11	15	31	1.83
399592--399629	20	1.9	20	94	0	67	34	13	7	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399653--399718	32	2.1	32	94	0	114	36	15	12	36	1.84
399654--399716	19	3.6	19	68	24	66	38	15	12	33	1.86
400153--400177	13	1.9	13	100	0	50	36	16	16	32	1.90
400137--400198	33	1.9	32	90	3	97	40	17	14	27	1.89
401054--401172	61	2.0	61	93	0	202	37	15	21	25	1.92
401221--401290	26	2.6	28	79	4	81	31	10	35	22	1.87
404145--404184	2	20.0	2	100	0	80	50	0	0	50	1.00
408391--408436	2	23.0	2	95	0	83	0	47	0	52	1.00
409509--409589	20	3.8	21	79	11	76	41	2	0	55	1.13
409527--409601	20	4.3	18	74	19	77	42	2	0	54	1.14
409549--409600	14	3.4	14	73	19	50	46	1	0	51	1.12
418660--418713	26	2.0	27	85	3	74	48	0	0	51	1.00
418688--418734	20	2.4	20	82	10	53	53	0	0	46	1.00
419210--419250	21	2.0	21	90	9	66	34	0	7	58	1.26
419322--419348	2	13.5	2	100	0	54	48	0	0	51	1.00
420717--420763	23	2.0	24	83	8	60	29	0	6	63	1.19
420806--420861	17	3.5	17	69	30	59	42	0	0	57	0.99
420816--420865	14	3.4	14	74	15	55	46	0	0	54	1.00
420845--420957	22	4.9	22	71	18	70	32	1	1	63	1.15
420915--420949	16	2.1	17	94	5	63	31	0	0	68	0.90
421413--421496	17	5.1	17	74	18	63	45	1	1	52	1.16
421429--421471	21	2.0	23	86	9	63	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421446--421492	24	2.0	23	88	12	69	42	0	0	57	0.98
421592--421672	39	2.1	37	84	8	101	54	1	0	44	1.08
422286--422318	17	1.9	18	88	11	52	78	0	21	0	0.75
422473--422517	18	2.4	18	85	7	54	24	0	4	71	1.05
422466--422520	10	5.5	10	76	20	53	25	0	3	70	1.03
422466--422517	18	3.2	18	67	27	53	25	0	3	71	1.03
422463--422533	30	2.4	30	88	6	101	26	1	4	67	1.17
423126--423170	24	2.0	23	86	8	65	60	2	0	37	1.09
423135--423182	15	3.1	15	84	3	51	54	4	2	39	1.32
426411--426455	24	1.9	23	95	4	81	42	22	8	26	1.83
427927--427953	2	13.5	2	100	0	54	51	0	0	48	1.00
428416--428447	3	10.7	3	93	0	55	0	37	0	62	0.95
428699--428742	20	2.2	20	100	0	88	38	0	4	56	1.20
428708--428771	20	3.2	20	84	0	74	37	0	3	59	1.13
428762--428813	26	2.0	27	88	3	79	50	0	0	50	1.00
428787--428835	20	2.5	19	87	9	64	51	0	2	46	1.12
428767--428852	23	3.7	23	73	21	72	51	0	2	46	1.13
429190--429232	18	2.3	18	80	4	50	46	2	0	51	1.13
430524--430571	20	2.6	19	84	12	64	41	0	0	58	0.98
431043--431083	21	2.0	21	85	4	57	46	0	0	53	1.00
431481--431602	9	15.1	8	70	19	76	45	0	1	52	1.10
431482--431624	23	6.0	23	68	20	82	46	0	2	51	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431480--431561	32	2.6	33	75	17	84	43	0	0	56	0.99
431512--431557	24	2.0	24	84	16	62	41	0	0	58	0.98
431491--431605	17	6.6	17	73	13	74	46	0	1	52	1.11
433103--433163	22	2.7	23	80	5	72	49	1	0	49	1.10
435281--435316	18	2.0	18	94	0	63	50	2	0	47	1.15
435886--435926	19	2.1	20	86	4	57	31	0	0	68	0.90
437003--437032	8	3.8	8	100	0	60	26	0	0	73	0.84
437070--437115	13	3.5	13	78	21	60	36	2	2	58	1.22
437222--437319	17	6.2	17	67	22	61	34	2	2	61	1.19
438970--439001	16	1.9	17	93	6	57	12	9	0	78	0.97
438971--439021	26	1.9	27	84	4	68	19	5	0	74	1.02
439616--439656	20	2.1	20	90	4	66	29	0	4	65	1.13
441000--441058	2	29.5	2	100	0	118	49	0	50	0	1.00
442950--442997	25	2.0	24	87	4	69	27	2	0	70	0.98
442947--443016	17	4.2	17	80	7	81	27	1	0	71	0.94
443665--443777	29	3.8	30	84	3	124	30	2	11	54	1.50
444726--444880	70	2.2	69	84	7	190	42	7	17	32	1.78
444801--445002	96	2.1	97	87	4	284	36	8	22	32	1.85
448009--448062	17	3.2	17	89	2	83	53	16	11	18	1.72
448813--448852	21	1.9	21	85	10	55	55	17	2	25	1.55
449897--449923	13	2.1	13	100	0	54	29	14	14	40	1.86
449907--449962	19	2.9	19	79	10	69	37	16	12	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449992--450045	20	2.7	20	91	5	83	31	12	18	37	1.89
456355--456393	21	1.9	21	89	5	62	33	23	0	43	1.54
458773--458831	19	3.1	19	83	11	77	33	16	18	30	1.94
458770--458825	20	2.8	20	86	7	80	32	17	17	32	1.94
458857--458907	20	2.5	20	87	6	68	35	13	15	35	1.87
462837--462862	13	2.0	13	100	0	52	38	15	15	30	1.88
462912--462966	19	2.8	20	77	5	67	32	12	18	36	1.88
465464--465491	13	2.2	13	100	0	56	42	14	14	28	1.84
465617--465657	19	2.2	19	86	8	57	51	19	2	26	1.59
469717--469818	51	2.0	51	98	0	195	27	14	19	38	1.91
471690--471738	13	4.2	13	73	24	54	36	16	12	34	1.86
471690--471759	33	2.1	34	86	7	99	34	18	12	34	1.89
471788--471842	19	2.8	20	83	5	76	32	18	18	30	1.95
473949--473990	16	2.5	17	75	21	52	54	0	0	45	0.99
476181--476222	21	2.0	21	90	4	68	40	14	4	40	1.67
477083--477148	3	22.3	3	96	3	125	65	0	0	34	0.93
477379--477408	8	3.8	8	100	0	60	50	0	0	50	1.00
477404--477443	11	3.8	11	87	12	66	32	0	0	67	0.91
477404--477443	20	2.0	20	95	0	71	32	0	0	67	0.91
477517--477558	20	2.0	22	86	9	61	40	0	0	59	0.97
477879--477913	11	3.2	11	91	0	52	34	0	0	65	0.93
478467--478520	22	2.7	19	76	20	56	40	1	0	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478427--478493	31	2.1	32	83	8	84	37	2	0	59	1.13
478471--478516	22	2.0	23	91	4	76	43	2	0	54	1.12
482030--482075	24	1.9	24	82	8	58	56	2	6	34	1.37
482492--482536	2	22.5	2	100	0	90	48	0	0	51	1.00
482892--482924	16	2.1	16	88	11	50	39	0	3	57	1.14
483194--483444	131	1.9	131	81	3	299	28	7	8	55	1.58
483972--484028	13	3.9	13	76	24	60	35	14	17	33	1.90
483952--484052	32	3.1	32	98	1	193	34	11	18	34	1.88
483951--484047	19	5.7	19	72	27	101	34	12	18	35	1.88
484103--484251	52	2.9	52	91	2	228	34	16	18	31	1.93

Tables:   1   2   3   4   5   6   7