genome.fa.s70.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold70
Parameters: 2 7 7 80 10 50 1000
Length:  1110102

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486368--486418	27	2.0	26	81	11	61	27	41	13	17	1.87
487947--487985	2	19.5	2	100	0	78	51	0	0	48	1.00
488305--488340	2	18.0	2	100	0	72	50	0	0	50	1.00
490947--491020	20	3.8	20	81	1	96	31	17	13	37	1.89
497623--497771	52	2.9	52	86	5	205	30	16	18	35	1.92
497811--497835	13	1.9	13	100	0	50	32	16	16	36	1.90
497790--497855	32	2.0	33	94	2	116	36	16	12	34	1.86
498448--498821	169	2.2	172	81	7	422	37	14	24	22	1.92
498673--499425	43	15.8	52	76	14	586	30	18	25	25	1.97
498797--498864	22	3.1	22	62	19	52	30	17	25	26	1.97
498775--499430	43	14.1	43	78	14	637	30	18	25	25	1.98
498722--499412	92	7.3	94	89	5	660	30	18	25	25	1.98
498876--499420	141	3.9	134	83	9	634	30	18	25	25	1.98
498775--499412	233	2.7	231	85	8	859	30	18	25	25	1.98
499418--499752	33	10.5	32	88	7	481	19	17	34	28	1.95
499755--500318	131	4.2	132	82	9	560	33	13	33	19	1.91
499761--500186	31	12.9	31	75	15	170	32	14	33	19	1.92
499790--500292	100	5.0	98	81	8	473	33	13	33	19	1.91
499756--500318	34	16.8	34	79	8	503	33	13	33	19	1.91
500332--500474	31	4.6	31	88	5	216	25	16	31	27	1.96
500298--500474	63	2.8	62	86	6	241	25	15	31	27	1.95
500292--500474	94	2.0	93	85	3	251	27	14	31	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501423--501489	26	2.6	26	86	6	84	0	10	7	82	0.85
501416--501489	8	9.5	8	74	11	55	0	12	6	81	0.88
504661--504752	44	2.1	44	97	2	177	43	15	19	21	1.87
505708--505732	13	1.9	13	100	0	50	32	16	16	36	1.90
505687--505754	32	2.1	33	94	2	120	35	16	11	36	1.85
510210--510556	80	4.4	79	79	4	340	28	25	12	33	1.92
510205--510554	159	2.2	160	80	3	393	28	26	12	33	1.92
517509--517643	49	2.8	49	83	6	175	34	19	25	20	1.96
517694--518130	28	15.2	28	85	4	543	21	17	31	29	1.96
524180--524298	42	2.8	42	89	0	166	12	42	0	44	1.48
526010--526130	11	10.5	12	73	20	66	4	3	9	82	0.91
526014--526130	9	12.9	9	79	8	105	3	3	10	82	0.89
526078--526130	1	53.0	1	80	0	61	0	0	9	90	0.45
539991--540115	20	5.7	20	70	18	97	41	12	16	30	1.84
541407--541558	62	2.4	61	84	10	209	23	22	20	33	1.97
541527--541592	34	1.9	34	93	0	114	22	16	19	40	1.91
541465--541643	96	1.9	96	90	2	288	24	21	18	36	1.95
541487--541671	96	1.9	95	82	2	208	23	21	20	34	1.96
541561--542059	61	8.0	62	82	4	556	23	24	20	31	1.98
541561--542059	123	4.0	124	84	3	583	23	24	20	31	1.98
542065--542650	87	6.9	85	76	7	481	21	24	12	41	1.87
542065--542639	42	13.5	42	75	9	418	20	24	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542068--542639	173	3.4	171	79	6	628	20	24	12	41	1.87
543383--543566	50	3.7	50	86	2	237	26	17	14	41	1.87
543383--543565	99	1.8	100	84	3	253	26	16	14	42	1.87
545849--546191	79	4.3	79	77	8	295	27	24	12	36	1.91
545850--546213	159	2.3	157	80	7	396	27	24	13	34	1.92
546167--546265	51	1.9	51	85	4	137	25	27	12	35	1.91
548471--548522	20	2.5	20	77	20	54	36	23	0	40	1.55
550374--550398	13	1.9	13	100	0	50	32	16	16	36	1.90
550386--550438	21	2.6	21	84	3	72	41	13	15	30	1.85
550470--550537	33	2.1	32	83	2	82	38	17	10	33	1.84
552152--552207	19	2.9	19	89	2	76	33	21	8	35	1.85
552238--552300	33	1.9	33	90	6	101	36	15	17	30	1.91
556036--556169	50	2.7	50	84	10	172	41	11	18	28	1.85
557020--557123	33	3.3	31	74	14	95	27	11	25	34	1.91
557068--557673	28	21.5	28	75	8	437	24	18	29	27	1.98
557128--557678	56	9.9	56	85	4	510	24	18	29	27	1.98
557128--557673	167	3.3	166	82	6	538	24	18	29	27	1.98
558767--558825	12	5.2	12	69	19	54	33	13	13	38	1.84
558792--558848	20	2.8	20	86	5	71	33	15	12	38	1.85
561144--561212	27	2.6	27	95	0	120	24	40	15	18	1.90
562271--562304	15	2.1	17	89	10	54	47	11	2	38	1.55
567343--568408	28	37.2	28	81	7	1094	29	30	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582685--582719	18	2.0	18	94	5	63	42	11	11	34	1.77
583702--583782	31	2.5	31	78	11	92	29	17	25	27	1.97
585583--585696	50	2.3	50	86	3	149	28	14	15	41	1.86
589088--589317	121	1.9	121	97	0	433	43	18	10	26	1.83
592481--592533	20	2.6	20	84	3	61	41	9	16	32	1.81
592522--592560	13	3.0	13	84	0	60	33	10	15	41	1.81
594626--594658	16	2.1	16	94	0	57	21	12	9	57	1.62
599037--599175	51	2.7	52	84	5	185	42	12	12	31	1.81
599889--600022	61	2.2	61	81	2	153	41	10	23	24	1.85
599969--600349	52	6.9	53	76	9	225	38	13	23	25	1.91
600030--600203	63	2.8	63	82	5	210	38	12	25	24	1.89
600468--601689	28	42.1	30	72	10	168	24	18	29	27	1.98
600635--600711	31	2.6	29	80	11	84	35	9	31	24	1.87
600710--601538	58	14.2	58	73	11	303	21	18	31	27	1.97
600703--600938	86	2.7	84	81	6	258	25	16	29	27	1.97
600875--601005	67	2.0	67	85	0	181	26	16	29	26	1.97
600959--601752	116	6.9	114	79	5	606	22	18	30	28	1.97
600710--601755	202	5.2	198	79	7	867	22	18	30	28	1.97
600959--601752	144	5.5	143	78	5	595	22	18	30	28	1.97
600947--601755	86	9.4	84	79	6	599	22	18	30	28	1.97
600942--601690	58	13.1	56	77	9	451	22	18	30	28	1.97
600947--601755	28	28.2	28	75	11	492	22	18	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601741--601854	29	3.8	28	79	13	95	28	16	28	26	1.97
601766--601857	29	3.1	29	84	7	105	28	17	28	26	1.98
603161--603224	16	4.3	15	74	24	55	0	9	12	78	0.97
603157--603212	18	3.0	18	76	12	51	0	7	12	80	0.90
607643--607761	59	2.0	59	93	0	202	39	15	9	36	1.79
610305--610413	51	2.1	51	86	6	150	40	14	15	29	1.87
611325--611546	78	2.9	79	77	12	207	41	13	18	26	1.87
614554--614625	21	3.5	21	79	7	67	37	20	5	36	1.76
621933--621974	18	2.3	19	87	4	59	69	2	2	26	1.13
621952--621995	13	3.3	13	81	12	54	79	0	0	20	0.73
624105--624262	69	2.3	69	89	0	253	28	20	13	37	1.91
628234--628821	165	3.6	164	78	8	563	32	11	7	47	1.69
628289--628714	166	2.6	168	83	5	519	34	12	7	46	1.69
630018--630055	2	19.0	2	88	0	58	47	2	2	47	1.30
631725--632079	119	3.0	117	87	2	476	41	10	12	35	1.78
637142--637233	45	2.0	45	100	0	184	44	19	15	20	1.86
638107--638152	16	3.0	16	90	6	69	76	0	4	19	0.96
638107--638152	5	9.0	5	85	4	65	76	0	4	19	0.96
640358--640446	32	2.9	30	73	8	88	43	11	21	23	1.84
641511--641773	83	3.2	83	78	3	287	45	12	19	22	1.84
647025--647111	20	4.4	20	74	8	79	40	12	14	32	1.84
647042--647121	40	2.0	41	82	4	101	36	13	13	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647161--647214	20	2.7	20	91	8	83	29	18	12	38	1.88
650130--650176	23	2.0	23	100	0	94	25	8	17	48	1.74
654169--654274	44	2.4	44	87	0	149	35	6	17	39	1.76
654988--655043	19	2.9	19	89	2	85	33	19	10	35	1.87
655513--655557	23	2.0	23	82	8	56	28	8	22	40	1.84
657039--657153	58	2.0	60	81	6	137	46	11	6	35	1.67
661855--661906	19	2.7	20	87	6	79	42	15	13	28	1.85
664409--664536	37	3.4	37	71	15	93	25	24	9	40	1.85
666628--666661	18	1.9	18	88	5	52	35	8	2	52	1.47
668793--669126	89	3.8	86	75	12	247	33	11	23	30	1.91

Tables:   1   2   3   4   5   6   7