genome.fa.s70.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold70
Parameters: 2 7 7 80 10 50 1000
Length:  1110102

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987300--987362	33	1.9	33	83	0	81	34	11	20	33	1.88
995356--995424	23	3.0	22	85	10	86	36	2	30	30	1.72
996174--996199	13	2.0	13	100	0	52	30	15	15	38	1.88
997162--997238	24	3.2	24	74	7	75	24	23	19	32	1.97
998199--998656	117	3.9	116	76	7	422	34	14	17	33	1.90
1004355--1004445	29	3.1	30	71	16	82	26	20	24	28	1.99
1004433--1004479	23	2.0	23	88	8	69	40	12	21	25	1.89
1004619--1004658	20	2.0	20	95	0	71	45	7	10	37	1.66
1005433--1005480	22	2.3	22	86	13	66	25	4	0	70	1.04
1006878--1006937	21	2.9	21	82	5	68	33	25	5	36	1.78
1008051--1008110	21	2.9	21	85	5	77	33	26	5	35	1.78
1008404--1008434	15	2.0	16	93	6	55	51	6	0	41	1.27
1008382--1008434	26	2.2	23	83	10	61	50	5	0	43	1.25
1009436--1009643	79	2.6	78	79	10	233	34	14	24	26	1.94
1009598--1009762	51	3.2	50	77	5	170	33	10	26	29	1.90
1009749--1009817	28	2.5	27	86	9	95	24	14	34	26	1.94
1009939--1010015	39	2.0	39	82	5	93	28	15	25	29	1.96
1012343--1012436	20	4.7	20	89	5	111	41	11	17	29	1.84
1012452--1012481	13	2.3	13	94	0	51	36	13	20	30	1.90
1014032--1014066	19	1.9	19	88	11	56	37	11	0	51	1.38
1014280--1014321	15	2.9	14	82	6	57	52	0	2	45	1.13
1014875--1015007	65	2.0	65	100	0	266	45	15	9	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020262--1020554	154	1.9	156	80	6	346	37	18	13	29	1.90
1020793--1020856	30	2.1	31	82	8	78	50	12	10	26	1.73
1026267--1026412	61	2.4	61	87	7	201	35	10	28	25	1.90
1026350--1026485	52	2.6	52	78	0	155	34	16	22	25	1.95
1026692--1026979	32	9.0	31	80	6	242	20	17	30	31	1.95
1026676--1026905	95	2.4	95	83	5	259	21	17	29	31	1.96
1026694--1026979	64	4.5	64	80	4	276	20	17	30	31	1.96
1027163--1027216	28	1.9	28	88	0	81	27	22	24	25	2.00
1027276--1027309	14	2.5	14	90	4	52	32	14	14	38	1.87
1034158--1034340	79	2.3	79	82	4	217	36	11	23	28	1.90
1034277--1034394	51	2.3	51	83	9	143	31	11	25	31	1.92
1034378--1034453	28	2.8	28	84	6	93	25	19	31	23	1.98
1034362--1034571	109	1.9	109	83	3	271	34	15	24	25	1.95
1034566--1034689	51	2.4	51	79	0	158	35	11	24	29	1.90
1035965--1036136	61	2.8	60	86	2	245	27	27	19	25	1.99
1036226--1036323	42	2.4	42	77	8	103	16	29	12	41	1.84
1036930--1037015	19	4.8	18	72	21	65	36	11	16	36	1.85
1036972--1036996	13	1.9	13	100	0	50	36	16	16	32	1.90
1036951--1037023	32	2.3	32	95	0	128	34	10	17	36	1.85
1037040--1037079	21	1.9	21	89	0	62	45	10	22	22	1.82
1039357--1039660	79	3.9	79	83	3	373	27	29	13	29	1.94
1039592--1039759	51	3.4	50	86	5	232	29	27	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039513--1039838	178	1.8	178	89	0	508	28	26	13	32	1.93
1039711--1039861	79	1.9	79	89	2	232	27	22	14	35	1.93
1041903--1041979	20	3.8	20	93	3	111	40	12	18	28	1.87
1041903--1041996	40	2.3	40	83	7	111	40	13	17	28	1.87
1042012--1042041	13	2.3	13	100	0	60	40	13	16	30	1.87
1042625--1042753	41	3.1	40	75	12	118	43	11	25	19	1.85
1042912--1043155	61	4.1	60	81	8	293	30	20	24	24	1.98
1043196--1043497	55	5.4	55	84	4	320	23	20	28	28	1.99
1043198--1043500	111	2.7	111	84	6	362	24	19	27	28	1.99
1044576--1044632	1	57.0	1	78	0	60	3	1	5	89	0.64
1044560--1044626	10	7.0	9	83	8	53	1	8	4	85	0.80
1044582--1044632	21	2.3	22	90	6	77	3	0	5	90	0.56
1047723--1047805	41	2.0	41	100	0	166	16	26	18	38	1.92
1056995--1057046	28	1.9	27	88	7	79	28	21	30	19	1.97
1056877--1057097	79	2.8	79	84	4	259	33	14	24	27	1.94
1057031--1057143	51	2.2	51	84	7	149	32	8	26	31	1.87
1057135--1057206	28	2.6	28	82	8	76	30	20	25	23	1.99
1057083--1057362	108	2.6	107	81	2	346	32	15	25	27	1.95
1057302--1057441	51	2.8	50	78	3	163	35	12	22	30	1.91
1059803--1059832	13	2.3	13	94	0	51	43	13	13	30	1.82
1059783--1059852	33	2.1	33	89	0	104	42	11	15	30	1.82
1059763--1059869	53	2.0	52	82	10	128	42	12	14	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059814--1059869	20	2.8	20	81	7	69	44	14	14	26	1.83
1073607--1073787	90	2.0	90	91	0	290	40	6	3	49	1.47
1073725--1073903	87	2.1	87	90	0	277	31	7	9	50	1.63
1074180--1074219	17	2.3	18	86	4	55	45	2	0	52	1.14
1074204--1074232	14	2.0	15	93	6	51	55	0	0	44	0.99
1074191--1074237	17	2.9	16	78	18	53	51	0	0	48	1.00
1074254--1074312	22	2.8	20	82	12	73	57	0	0	42	0.98
1082733--1082768	2	18.0	2	100	0	72	0	50	0	50	1.00
1091148--1091176	2	14.5	2	100	0	58	48	0	0	51	1.00
1092129--1092164	2	18.0	2	94	0	63	47	0	0	52	1.00
1092820--1092878	27	2.2	25	75	16	64	37	0	0	62	0.95
1092819--1092886	20	3.4	19	75	18	59	38	0	0	61	0.96
1093168--1093201	16	2.2	15	89	5	50	44	0	2	52	1.16
1093265--1093715	232	1.9	232	96	0	839	43	9	11	34	1.74
1094319--1094359	20	2.0	20	85	0	55	60	7	0	31	1.24
1094407--1094443	17	2.3	16	90	9	58	54	5	0	40	1.24
1094382--1094417	5	7.2	5	100	0	72	41	0	0	58	0.98
1097911--1097954	23	1.9	23	95	0	79	61	13	9	15	1.56
1098518--1098553	17	2.1	17	90	10	56	58	2	0	38	1.13
1098521--1098558	16	2.4	16	82	8	51	63	2	0	34	1.09
1098923--1098978	25	2.2	24	81	12	60	21	10	0	67	1.20
1099529--1099567	11	3.5	11	85	0	60	0	28	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100646--1100718	20	3.6	20	81	3	101	35	13	19	31	1.91
1100664--1100739	21	3.7	21	80	3	100	42	11	17	28	1.84
1100646--1100739	41	2.3	41	98	0	179	39	12	18	29	1.88
1100778--1100803	13	2.0	13	100	0	52	38	15	15	30	1.88
1104864--1104894	15	2.1	15	93	0	53	48	16	22	12	1.80
1106972--1107036	13	5.0	13	94	0	112	30	18	15	35	1.92
1106973--1107036	26	2.5	26	100	0	128	31	18	15	34	1.93
1109472--1109544	20	3.6	20	81	3	101	35	13	19	31	1.91
1109472--1109564	41	2.3	40	98	1	177	38	12	18	30	1.88
1109490--1109564	20	3.7	21	80	5	100	41	12	17	29	1.85
1109603--1109628	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6   7

The End!