genome.fa.s268.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168093.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_34, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  596061

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290466--291940	181	8.3	179	73	10	1031	41	8	9	40	1.67
291887--292046	81	2.0	80	90	3	250	39	13	8	39	1.74
292986--293436	179	2.5	177	78	8	407	42	8	7	41	1.64
292986--293504	177	2.9	175	75	9	478	42	8	8	40	1.66
293489--298994	181	30.4	181	73	9	2718	39	8	9	41	1.69
293489--299463	362	16.5	362	71	10	2995	40	8	9	41	1.68
295090--299494	181	24.6	181	71	11	1702	40	8	9	41	1.68
295113--299494	361	12.2	356	70	12	849	40	8	9	42	1.68
293489--299463	541	11.0	534	72	12	2620	40	8	9	41	1.68
296891--298900	542	3.7	543	78	7	1391	40	8	9	41	1.68
299553--299604	18	3.1	17	75	8	52	42	1	13	42	1.55
299215--299805	313	1.9	313	90	3	940	41	7	9	41	1.65
299536--301073	357	4.3	356	73	10	937	38	7	10	42	1.68
299540--301020	182	8.3	177	72	11	821	39	7	10	42	1.68
299558--301071	538	2.8	538	79	7	1327	38	7	10	42	1.68
301551--301581	14	2.1	15	94	5	55	38	3	0	58	1.15
301224--301616	175	2.2	179	78	9	405	40	8	8	41	1.66
301857--305109	181	18.1	180	76	6	2493	40	8	9	42	1.67
299539--305105	722	7.8	716	74	10	3276	39	8	9	41	1.68
303693--303726	16	2.1	16	88	0	50	20	2	0	76	0.92
301857--305109	361	9.0	360	77	7	2560	40	8	9	42	1.67
305140--306598	181	8.1	179	73	7	923	40	8	10	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305361--306598	363	3.4	357	77	8	1066	40	7	9	41	1.67
305634--306589	362	2.6	364	81	6	1023	41	6	9	42	1.63
307064--309431	181	13.1	181	75	7	1733	40	10	8	40	1.69
309180--309775	308	1.9	309	80	3	689	40	10	8	39	1.71
308621--310282	852	1.9	852	78	6	1777	41	10	8	39	1.69
310422--310469	17	2.8	17	81	12	53	41	10	2	45	1.50
309471--312767	181	18.3	179	75	8	2041	41	9	8	40	1.67
309471--312763	361	9.2	358	75	8	2196	41	9	8	40	1.67
312689--312846	80	2.0	79	83	7	203	46	6	8	37	1.62
312766--313164	179	2.2	179	83	3	496	42	8	8	40	1.67
313162--313212	26	2.0	25	88	3	75	50	1	3	43	1.31
313408--315182	357	4.9	357	74	8	1074	42	10	7	39	1.68
313191--315230	181	11.4	178	72	11	845	42	10	8	39	1.68
314331--315182	176	4.8	179	74	8	470	41	9	7	41	1.66
315232--318596	181	18.8	179	76	8	2393	41	9	8	40	1.68
316703--316750	19	2.6	19	86	3	62	60	2	4	33	1.27
315231--318596	534	6.3	528	75	10	2198	41	9	8	40	1.68
320454--323662	181	17.9	180	75	9	1943	42	9	7	40	1.66
320974--323662	542	5.0	525	75	10	1511	42	9	7	40	1.66
320782--323662	361	8.0	361	74	9	1712	42	9	7	40	1.66
320610--323512	726	4.1	716	74	11	1861	42	9	7	40	1.66
320885--323662	360	7.7	360	74	11	1023	42	9	8	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323766--323811	18	2.6	18	76	13	51	43	13	4	39	1.63
323754--324347	177	3.3	176	74	9	540	40	10	8	40	1.70
324419--344547	181	111.0	181	69	12	6585	41	9	8	40	1.69
324791--328183	180	19.0	180	75	8	2234	40	10	8	40	1.69
327235--327701	170	2.7	172	82	9	504	41	10	8	39	1.69
324419--378170	718	74.7	705	68	14	6985	41	9	8	40	1.68
327987--328393	214	1.9	214	81	4	489	41	11	8	39	1.71
328567--328997	225	1.9	223	82	7	539	39	9	8	42	1.67
328791--329853	177	5.9	175	74	12	583	42	8	8	40	1.66
328223--329363	582	2.0	575	79	7	1221	41	8	9	40	1.68
329892--330706	361	2.3	359	76	5	802	42	9	9	39	1.69
330550--330825	145	1.9	145	85	2	360	43	8	8	39	1.66
331658--331696	20	2.0	20	85	9	55	53	0	5	41	1.23
330708--339494	537	16.4	521	71	12	2479	41	10	8	39	1.69
331999--332420	174	2.4	177	81	6	455	44	9	6	39	1.64
332615--332660	18	2.6	17	83	13	58	45	10	0	43	1.39
332221--333764	363	4.3	363	74	8	910	41	10	8	39	1.69
333798--340719	180	38.6	181	74	8	4573	41	10	8	39	1.69
333272--334273	519	1.9	519	79	3	1120	41	10	8	40	1.68
333819--340719	357	19.3	354	73	10	3920	41	10	8	39	1.69
339830--339923	49	1.9	48	82	6	118	51	8	3	37	1.49
341103--344546	361	9.6	361	74	9	1449	41	8	8	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341692--341742	17	2.9	18	80	14	61	41	11	5	41	1.66
340744--378170	897	41.7	881	71	13	12125	41	9	8	40	1.68
344522--344572	26	2.0	26	92	3	86	52	1	3	41	1.31
344341--344716	206	1.8	204	82	7	483	44	7	6	41	1.59
345374--345983	182	3.4	181	78	8	472	44	11	7	36	1.69
345374--346147	182	4.3	180	77	6	464	44	11	7	36	1.70
345879--346235	180	2.0	180	82	5	436	43	11	7	37	1.70
346433--346707	138	2.0	139	80	5	306	45	8	8	37	1.65
346572--349941	181	18.8	180	75	8	2292	41	9	8	40	1.67
346800--349809	361	8.4	360	75	8	2140	41	9	7	40	1.67
347734--348052	176	1.8	176	80	2	388	39	10	8	42	1.69
346880--374019	719	37.3	719	70	12	2454	41	9	8	40	1.68
350409--353962	181	19.9	179	74	9	1872	41	9	7	40	1.66
350427--353967	538	6.6	535	73	11	1211	41	9	7	40	1.66
351558--374141	360	61.8	358	69	14	6875	41	9	8	40	1.68
354015--354061	18	2.7	18	80	12	62	40	10	4	44	1.59
354665--358441	181	21.2	181	75	7	2714	41	10	8	40	1.69
354704--378121	361	64.8	355	69	13	5345	41	9	8	39	1.68
358244--358654	216	1.9	215	82	2	511	40	11	9	38	1.72
358457--359029	180	3.2	178	80	4	512	40	10	9	40	1.71
358663--359434	407	1.9	405	82	4	971	40	8	9	41	1.67
359063--360387	180	7.3	181	75	9	995	41	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359777--360387	177	3.4	175	78	6	552	41	10	7	39	1.69
360347--360482	65	2.1	67	91	2	222	36	11	8	43	1.71
360568--365108	181	25.1	177	70	13	1121	42	10	8	39	1.69
361317--361529	106	2.0	105	85	4	286	48	6	9	36	1.60
361423--365071	181	20.3	180	70	11	1365	42	10	8	38	1.69
361423--362475	180	5.9	177	78	5	635	41	8	9	40	1.68
362686--362733	23	2.0	23	84	8	60	56	6	0	37	1.25
363073--363110	19	2.1	19	85	14	53	50	2	7	39	1.46
362567--363706	538	2.1	535	81	4	1273	42	10	8	38	1.70
362567--370424	181	44.1	175	71	12	2854	41	10	8	39	1.69
365196--374141	181	49.5	180	73	10	4616	41	9	8	40	1.68
366153--366185	18	1.9	17	88	11	50	39	6	6	48	1.53
369550--369600	18	2.9	18	71	14	52	43	7	3	45	1.51
370412--370476	19	3.2	19	72	23	60	41	13	6	38	1.70
373332--373364	15	2.3	15	89	5	50	66	0	6	27	1.15
374797--375128	163	2.0	162	81	3	389	41	11	7	40	1.69
374348--378204	360	10.8	341	70	14	1192	42	9	8	40	1.67
374957--378166	181	17.8	181	75	6	2244	41	9	8	40	1.68
375209--375547	182	1.9	183	82	5	436	42	7	7	42	1.63
375483--375515	18	1.9	17	88	11	50	42	6	3	48	1.43
375036--378153	541	5.8	536	76	8	2171	42	9	8	40	1.67
378222--378275	18	3.0	19	76	10	60	42	12	1	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378231--378851	179	3.5	181	78	5	568	39	10	8	40	1.71
379066--379106	17	2.4	18	80	12	50	43	9	2	43	1.50
378884--379600	181	4.0	178	78	8	675	41	9	8	41	1.68
379507--379707	108	1.9	108	84	0	276	47	6	10	34	1.66
379626--382258	180	14.7	179	74	10	1707	40	10	8	39	1.71
379158--380058	468	1.9	467	84	4	1219	42	9	8	39	1.69
379615--381929	532	4.3	521	76	8	1676	40	10	8	39	1.71
382056--382621	291	1.9	292	82	3	703	39	8	8	42	1.66
382353--384458	182	11.7	181	73	9	1387	41	9	8	40	1.67
381867--382758	471	1.9	469	79	5	987	41	9	8	41	1.68

Tables:   1   2   3   4   5   6   7