genome.fa.s268.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168093.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_34, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  596061

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381696--382982	652	2.0	652	79	6	1399	41	9	8	40	1.69
384865--385365	182	2.8	181	81	3	598	43	9	7	39	1.65
385321--385375	18	3.1	18	74	12	51	38	10	9	41	1.72
385225--385526	161	1.9	161	84	6	407	44	8	8	39	1.65
386566--386633	25	2.6	25	90	4	109	29	13	5	51	1.64
386596--387673	179	6.0	176	76	7	651	40	10	8	41	1.69
386646--387658	356	2.8	354	77	6	878	40	10	8	40	1.69
387626--387705	35	2.3	35	91	0	133	38	7	8	45	1.64
387445--387885	215	2.0	216	83	3	559	39	9	9	40	1.71
387661--388183	181	2.9	179	81	3	595	41	8	8	40	1.68
387276--388075	396	2.0	396	83	5	992	40	9	8	41	1.69
388226--391584	181	18.9	179	72	8	1500	41	10	8	39	1.70
389181--389213	17	1.9	17	88	11	50	60	6	3	30	1.36
389239--391584	180	13.1	179	75	7	1697	40	10	8	39	1.70
389244--391568	363	6.5	346	73	10	1241	41	10	8	39	1.70
390006--391546	717	2.1	715	79	7	1622	41	10	8	39	1.70
391950--396080	181	23.2	181	76	8	3053	41	9	8	40	1.68
392867--392898	15	2.1	15	94	0	55	59	0	0	40	0.97
392034--399990	181	44.7	172	71	13	1260	41	9	8	40	1.68
393481--405664	361	34.2	356	71	12	2432	41	9	8	40	1.68
395962--396255	148	2.0	147	83	8	373	43	9	8	38	1.66
396110--399984	181	21.6	180	74	7	2710	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396111--405661	361	26.7	355	72	12	3872	41	9	8	40	1.67
396105--399980	541	7.2	535	74	8	1708	41	9	8	40	1.68
400019--405682	181	31.6	181	75	8	3445	41	9	8	40	1.67
401510--405625	542	7.6	539	75	8	2008	41	9	8	40	1.67
402968--402999	14	2.3	14	94	0	55	68	0	6	25	1.12
400148--408429	718	11.6	711	73	9	3731	41	9	8	40	1.68
404099--404134	16	2.1	18	90	10	58	44	2	8	44	1.48
405486--405518	15	2.3	15	89	5	50	72	0	0	27	0.85
405571--405871	145	2.1	146	79	3	320	41	8	9	39	1.69
405720--408446	180	15.3	178	73	8	1579	41	10	8	39	1.69
402840--408442	357	15.7	354	69	13	1748	41	9	8	40	1.68
405739--408397	181	14.9	177	72	9	1112	41	10	8	39	1.68
410150--410513	43	8.4	43	83	4	448	44	16	14	25	1.85
410145--410513	87	4.3	87	84	4	462	44	16	14	25	1.85
410145--410512	174	2.1	172	86	4	517	44	16	14	25	1.85
410839--410940	17	5.9	17	74	4	53	30	12	17	39	1.87
410867--410907	18	2.4	17	87	4	55	31	9	14	43	1.78
411069--411113	17	2.6	17	82	6	56	33	17	13	35	1.89
411069--411156	34	2.6	34	77	10	90	36	12	14	36	1.84
411080--411207	17	7.5	17	78	3	116	39	8	16	35	1.79
411342--411446	46	2.3	46	85	4	133	40	17	9	32	1.81
412825--412881	11	4.8	11	78	16	60	1	14	1	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416045--416095	17	3.2	15	74	20	50	72	3	1	21	1.11
417173--417205	18	1.9	17	88	11	50	39	6	6	48	1.53
416728--417686	177	5.4	174	75	12	620	43	9	8	38	1.68
416712--417799	178	6.1	178	76	10	735	41	9	8	39	1.70
417846--418170	178	1.8	180	84	6	455	41	7	9	41	1.66
418525--418995	178	2.6	177	80	6	461	41	6	9	42	1.63
418859--418913	23	2.4	24	75	9	60	45	1	0	52	1.11
418989--419036	25	1.9	25	83	8	62	45	6	6	41	1.54
417843--419672	830	2.2	830	94	1	3212	40	8	9	41	1.68
419354--421014	181	9.2	180	77	5	1195	40	8	9	41	1.67
419578--420730	539	2.1	541	80	5	1294	40	8	9	41	1.68
419071--421014	541	3.6	535	76	7	1458	39	8	9	41	1.69
420989--421041	27	2.0	27	96	0	97	50	1	0	47	1.12
422146--426812	181	25.9	179	75	8	3211	40	8	9	42	1.68
422126--426775	357	12.9	355	74	9	2846	40	8	9	41	1.68
422146--426779	361	12.8	356	73	10	1131	40	8	9	41	1.68
426810--430267	181	19.3	180	73	9	2083	40	8	9	41	1.68
429436--429468	18	1.9	17	88	11	50	48	3	6	42	1.43
428630--430286	363	4.6	359	76	8	933	40	8	8	42	1.66
431319--431695	178	2.1	175	85	9	498	42	9	6	42	1.61
432610--432643	17	2.0	17	94	0	59	41	2	11	44	1.56
436164--438153	179	11.1	179	76	6	1522	40	8	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435622--438153	360	7.0	354	74	10	1508	40	7	9	41	1.67
438534--439835	181	7.3	179	75	6	829	42	9	8	39	1.68
438589--439585	358	2.8	356	77	6	904	42	9	8	39	1.68
439566--439605	13	2.9	14	88	7	64	55	0	0	45	0.99
439543--439605	25	2.4	25	82	10	74	58	1	0	39	1.07
444632--444682	21	2.5	21	90	3	77	29	27	29	13	1.94
446477--446524	21	2.3	20	79	13	53	43	0	16	39	1.48
451797--454700	181	16.3	180	74	10	1811	40	8	9	40	1.68
451797--454703	362	8.1	361	75	9	2074	40	8	9	40	1.68
451797--454703	540	5.4	539	74	9	1924	40	8	9	40	1.68
454755--455567	361	2.3	360	80	2	873	42	8	8	40	1.65
454682--455567	180	4.9	180	81	3	802	41	8	8	41	1.65
457917--457964	19	2.7	18	83	6	62	41	12	4	41	1.62
455595--460553	180	27.5	179	73	10	2425	41	10	8	40	1.69
458658--458705	23	2.1	23	100	0	96	43	8	8	39	1.65
459489--463096	361	10.1	353	72	12	1363	42	9	8	39	1.68
460590--461218	344	1.8	343	79	6	727	42	12	8	37	1.73
460916--463039	538	3.9	538	76	7	1477	43	10	7	38	1.68
460916--463093	181	12.1	182	73	10	1125	43	10	7	38	1.68
462279--462347	34	2.0	34	94	0	120	36	5	11	46	1.64
462978--463238	144	1.8	143	81	8	325	39	10	9	40	1.73
463094--463699	179	3.4	179	77	6	433	41	9	9	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463814--463849	16	2.1	17	90	10	56	38	11	5	44	1.63
463387--464255	358	2.4	357	78	7	818	42	10	8	39	1.68
463094--464341	180	6.9	176	70	12	631	42	10	8	38	1.70
463904--464262	196	1.8	193	80	4	434	44	11	6	37	1.67
464331--464381	26	2.0	26	92	0	84	39	5	13	41	1.69
464150--464547	207	1.9	203	82	7	491	41	10	9	38	1.72
464399--464789	177	2.2	178	81	5	432	39	8	8	42	1.67
464493--464877	181	2.2	177	80	5	409	40	8	8	42	1.65
464926--470834	181	33.2	180	74	7	3521	41	9	8	40	1.69
464946--470833	357	16.5	357	73	8	3385	41	9	8	40	1.68
467024--467065	18	2.4	17	84	11	50	42	11	2	42	1.54
467561--467612	18	2.9	19	80	16	74	38	3	9	48	1.54
471478--471818	172	2.0	174	79	6	372	43	10	6	39	1.64
470903--474243	181	18.9	177	72	11	1797	42	9	7	40	1.67
472166--472470	163	1.9	163	80	5	366	41	6	7	43	1.59
473556--474228	349	1.9	347	81	4	809	42	10	7	39	1.67
474281--475295	180	5.7	177	75	7	757	42	8	7	40	1.64
475381--475891	181	2.9	171	76	11	477	41	9	8	40	1.68
477289--477318	15	1.9	16	93	6	53	60	3	0	36	1.14
477289--477474	60	3.1	61	89	4	288	48	6	10	33	1.65
478092--480750	181	14.9	179	74	9	1839	41	9	8	40	1.69
478095--480533	539	4.5	537	77	6	1734	41	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480025--480066	21	2.0	21	86	13	61	38	9	9	42	1.70
480675--480707	18	1.9	17	88	11	50	42	6	3	48	1.43
480755--481721	181	5.4	182	74	7	636	42	9	8	39	1.68
483320--483723	181	2.2	180	83	5	485	41	7	9	41	1.65
483726--492133	181	47.2	179	73	9	4698	39	8	9	42	1.68
483756--487177	363	9.5	360	74	8	2290	39	8	9	41	1.68
484208--486943	710	3.8	719	76	7	1805	39	8	9	42	1.68
487193--492116	358	13.8	351	72	10	2032	40	8	9	42	1.67
489165--489217	24	2.3	22	72	15	52	37	1	0	60	1.08
489349--489653	165	1.8	165	84	8	415	39	9	9	42	1.69

Tables:   1   2   3   4   5   6   7