genome.fa.s268.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168093.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_34, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  596061

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487190--492133	536	9.2	533	76	9	3268	40	8	9	42	1.67
492170--493589	181	7.9	181	79	4	1294	41	7	9	41	1.66
492318--493589	541	2.3	539	80	5	1376	40	7	9	42	1.66
494063--494115	20	2.7	20	100	0	106	37	24	22	15	1.92
495587--495629	20	2.1	20	83	12	52	51	0	18	30	1.47
496512--496642	56	2.3	56	81	4	145	28	9	9	52	1.65
498544--498578	16	2.2	16	94	0	61	34	11	11	42	1.77
499110--499163	25	2.2	25	80	6	67	20	7	22	50	1.73
501186--501221	17	2.1	17	90	10	56	36	2	5	55	1.38
501032--504945	180	21.9	182	74	8	2403	39	8	9	42	1.68
501051--508893	181	44.0	177	71	11	2601	39	8	9	42	1.68
501017--508893	894	8.8	872	71	12	2885	39	8	9	42	1.68
503972--504004	18	1.9	17	88	11	50	48	6	6	39	1.53
504984--508893	181	21.8	180	75	6	2633	39	8	10	42	1.69
501017--508893	540	14.7	532	72	11	2044	39	8	9	42	1.68
507051--507089	20	2.0	20	85	9	55	38	5	2	53	1.37
508938--509994	180	5.8	177	76	9	822	39	8	9	42	1.67
509140--509484	191	1.8	191	83	2	469	40	7	9	42	1.67
509025--509994	361	2.7	361	77	7	813	40	8	9	41	1.68
509792--510223	225	1.9	226	81	6	525	42	7	9	40	1.65
510471--511482	181	5.7	179	77	9	895	39	7	10	42	1.68
510465--511385	351	2.6	350	78	9	883	39	7	9	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511490--512016	183	2.9	181	77	8	523	42	9	9	38	1.70
511533--514167	181	14.7	181	74	7	1865	40	8	10	41	1.69
512586--514167	180	8.8	179	76	7	1260	39	7	10	42	1.69
511536--514167	719	3.7	714	75	9	1680	40	8	10	41	1.69
514873--515623	180	4.2	181	77	8	647	38	8	9	43	1.69
517137--518139	178	5.6	178	74	11	718	40	7	10	41	1.68
517148--518141	356	2.8	354	76	8	957	40	7	10	41	1.68
520683--520715	18	1.9	17	88	11	50	48	6	6	39	1.53
521462--521500	20	2.0	20	85	9	55	38	2	2	56	1.27
519873--525419	180	31.3	178	70	13	2099	40	7	9	42	1.66
521453--521750	155	2.0	149	82	9	361	41	5	9	43	1.59
522064--526969	891	5.5	880	72	12	2470	39	7	9	42	1.67
522062--525418	180	18.8	179	75	9	2311	40	8	9	42	1.67
524731--525056	164	2.0	164	82	4	399	39	8	9	42	1.67
524919--525872	496	1.9	500	81	6	1150	41	7	8	42	1.63
525493--527187	176	9.5	176	73	9	867	38	8	10	42	1.69
527420--527470	25	2.0	26	92	3	86	41	3	1	52	1.31
527277--527652	206	1.8	206	84	3	524	41	6	8	43	1.61
525474--529264	181	21.2	180	71	11	1315	39	7	10	42	1.67
528282--528331	17	2.8	19	76	14	61	44	8	8	40	1.63
528474--529264	182	4.4	180	76	6	634	39	7	9	43	1.67
529277--532561	181	18.1	180	72	11	1597	40	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529307--530125	363	2.3	352	79	5	833	39	8	11	40	1.70
529307--532504	361	8.8	355	71	14	952	40	8	10	41	1.69
530093--530186	49	1.9	49	95	0	170	36	4	10	48	1.57
533582--534187	173	3.4	176	79	6	607	39	9	8	42	1.67
534145--534232	44	2.0	44	97	0	167	32	11	9	46	1.71
534152--534221	21	3.2	21	65	21	54	35	11	8	44	1.71
533973--534412	224	2.0	225	81	3	519	40	10	7	41	1.68
535159--535198	16	2.6	16	84	4	55	70	0	5	25	1.08
534191--537174	180	16.6	180	75	8	1889	41	9	8	40	1.68
534191--537175	362	8.3	360	75	8	2259	41	9	8	40	1.68
534195--537172	539	5.5	534	76	8	2154	41	9	8	40	1.68
534794--537174	898	2.7	889	76	9	1912	42	9	8	39	1.68
536929--537519	324	1.8	325	80	2	713	43	8	8	39	1.65
537435--538564	360	3.2	360	77	7	877	44	9	7	38	1.65
537435--541184	181	20.5	177	70	14	1190	42	9	7	40	1.66
538652--541184	180	14.0	180	75	10	1513	41	9	7	40	1.67
538651--541184	360	7.0	358	76	8	1958	41	9	7	40	1.67
540451--540828	190	2.0	190	79	6	417	42	10	8	39	1.69
541186--541559	179	2.1	178	82	5	441	39	6	10	42	1.67
542358--542403	21	2.1	22	96	4	85	13	41	21	23	1.88
542367--542424	25	2.3	26	76	11	75	15	36	22	25	1.94
544206--544247	18	2.3	19	91	4	68	42	11	2	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544217--544564	181	1.9	180	83	5	443	39	8	8	42	1.68
544961--546322	181	7.6	179	75	8	975	41	7	9	41	1.66
546435--550842	362	12.4	354	74	9	2853	40	7	10	41	1.68
546435--550583	181	23.2	177	72	10	2129	40	7	10	41	1.67
546608--547456	177	4.8	174	76	8	620	39	7	11	42	1.69
547392--547888	179	2.9	168	79	8	423	40	8	9	42	1.66
546435--550842	359	12.4	359	75	8	2909	40	7	10	41	1.68
546435--550575	545	7.7	537	75	9	2421	40	7	10	41	1.67
547559--550842	181	18.4	179	75	7	2239	40	8	9	41	1.67
550927--551888	181	5.3	182	76	8	627	38	8	9	43	1.66
550911--552093	359	3.3	354	75	11	934	39	8	9	43	1.66
551740--552046	164	1.9	160	83	9	399	39	7	8	44	1.64
552074--552126	27	2.0	27	88	0	79	50	9	13	26	1.71
551912--552297	204	1.9	204	86	5	557	41	7	9	42	1.64
552228--552363	66	2.0	68	88	2	204	42	7	14	35	1.74
552410--552718	162	1.9	158	80	7	356	38	6	9	45	1.63
552760--553255	180	2.8	180	77	4	412	38	8	10	43	1.69
552560--554215	506	3.2	515	77	10	1243	40	8	9	42	1.68
553442--558185	361	13.3	361	72	11	1224	41	8	9	41	1.66
553329--558563	181	29.4	178	73	10	2718	40	8	9	41	1.67
554384--558595	181	23.5	181	75	9	2850	40	8	9	41	1.67
555104--559273	361	11.6	358	74	9	2710	40	7	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558586--558626	14	3.1	14	75	13	50	29	9	0	60	1.28
558604--558947	175	1.9	179	81	6	414	41	8	9	41	1.66
559312--559363	17	3.0	17	75	13	52	38	5	3	51	1.44
559307--561202	181	10.7	180	73	9	1098	42	10	7	39	1.68
560152--561163	182	5.6	181	77	8	800	42	10	7	39	1.68
560293--561166	363	2.4	361	80	6	933	43	10	7	39	1.67
560492--561165	366	1.9	364	82	3	840	42	10	7	39	1.68
561217--566094	181	27.0	178	71	11	1146	41	9	8	39	1.68
560720--561700	498	2.0	498	81	5	1142	42	11	7	39	1.68
561217--561873	360	1.8	360	82	4	840	41	10	6	40	1.66
562073--566119	181	22.5	181	76	6	2524	42	10	8	39	1.69
562161--566070	539	7.2	539	76	7	2350	41	10	8	39	1.69
566140--568341	181	12.2	180	72	11	1263	41	10	7	40	1.67
566510--567162	348	1.9	350	80	4	782	42	8	7	40	1.65
567441--568298	182	4.8	182	79	7	607	42	10	6	40	1.66
568264--568428	86	1.9	87	80	8	194	35	9	8	46	1.67
568338--572544	181	23.4	180	76	5	3193	41	9	8	39	1.69
567724--568929	629	1.9	626	80	7	1374	41	9	8	40	1.68
567375--569282	984	1.9	979	78	6	2007	41	9	7	40	1.67
568336--593043	898	27.4	886	68	14	4032	41	9	8	40	1.68
571372--571419	18	2.7	18	75	12	55	37	4	8	50	1.52
572544--573328	177	4.4	176	79	7	750	40	11	7	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573064--573097	18	1.9	17	88	5	50	44	11	5	38	1.65
573413--575392	178	11.0	179	77	7	1465	42	9	8	39	1.67
575048--575080	18	1.9	17	88	11	50	36	9	6	48	1.60
575950--579999	181	22.3	178	72	10	1783	41	9	8	40	1.67
576142--576971	360	2.3	359	78	8	862	42	8	7	40	1.65
577348--580001	540	4.9	537	78	6	2125	41	9	8	40	1.67
579568--580486	486	1.9	490	80	4	1108	41	9	7	41	1.66
579998--583727	181	20.7	179	72	11	1607	41	9	7	41	1.67
580773--580824	26	2.0	26	100	0	104	42	15	0	42	1.47
581483--583650	180	12.1	178	76	8	1587	41	9	7	41	1.67

Tables:   1   2   3   4   5   6   7