genome.fa.s301.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168126.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_37, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  424845

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 851 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296310--296340	5	6.0	5	96	3	53	80	0	0	19	0.71
296942--297051	10	10.4	10	66	18	53	78	3	3	14	1.03
296938--297051	48	2.4	47	78	10	115	78	3	3	14	1.03
296980--297051	28	2.7	26	79	14	83	77	1	4	16	0.99
296933--297046	38	2.9	37	77	10	95	76	3	3	16	1.07
297373--297427	17	3.2	17	75	14	60	76	5	7	10	1.15
297476--297531	21	2.5	22	75	16	62	75	5	8	10	1.19
297669--297711	15	2.7	16	85	7	52	74	0	11	13	1.07
298275--298379	39	2.6	42	72	14	105	76	5	5	12	1.14
298297--298390	22	4.5	21	72	18	63	75	5	5	13	1.15
298297--298396	29	3.5	28	73	21	84	76	5	5	14	1.13
299299--299359	20	3.0	20	76	7	61	80	3	9	6	1.00
299438--299475	19	2.0	19	85	10	51	76	7	0	15	1.01
299481--299530	15	3.2	16	83	11	50	72	2	10	16	1.21
300052--300322	141	1.9	142	92	0	454	58	7	4	29	1.47
300707--300752	19	2.4	19	88	3	65	78	6	2	13	1.04
301185--301232	25	1.9	25	87	8	71	79	0	6	14	0.92
301459--301520	29	2.1	30	82	5	74	67	3	9	19	1.33
301766--301854	24	3.6	23	73	15	63	75	3	6	14	1.14
301877--301950	23	3.2	23	76	19	73	74	6	4	14	1.18
301906--301948	22	2.0	22	90	9	70	74	4	2	18	1.10
302335--302422	42	2.1	41	81	10	99	72	4	9	13	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302536--302568	16	1.9	17	88	11	50	78	0	6	15	0.93
302500--302587	28	3.0	29	80	13	90	75	2	5	17	1.11
303526--303592	21	3.1	21	80	8	55	76	4	4	14	1.11
303531--303613	23	3.7	23	78	7	75	74	6	4	14	1.17
304047--304098	25	2.1	25	86	10	72	80	0	7	11	0.89
304195--304295	10	9.3	10	71	18	69	78	2	4	13	1.04
304195--304283	19	4.8	18	71	15	58	78	2	5	13	1.02
304195--304295	9	11.5	8	70	19	60	78	2	4	13	1.04
304195--304283	29	3.2	26	77	16	74	78	2	5	13	1.02
304808--304921	18	6.1	17	70	21	59	73	5	4	16	1.18
304936--305023	33	2.5	33	78	15	88	75	4	9	11	1.19
304969--305046	38	2.1	37	83	7	95	76	6	6	10	1.14
304959--305023	33	1.9	34	84	9	89	73	4	9	12	1.22
305007--305053	22	2.2	20	82	14	51	76	6	4	12	1.12
305507--305557	25	2.1	24	92	3	84	80	0	3	15	0.86
305514--305559	11	3.8	12	81	18	60	80	0	4	15	0.86
303919--309011	737	7.0	718	82	12	5661	68	4	9	16	1.34
305712--305760	23	2.3	21	82	10	55	73	4	6	16	1.19
306158--306218	25	2.5	25	82	12	81	77	1	9	11	1.07
306165--306207	17	2.8	15	80	16	52	86	0	6	6	0.72
306287--306331	17	2.7	17	82	3	56	75	4	0	20	0.97
306293--306351	26	2.2	24	82	14	64	71	6	1	20	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306287--306376	36	2.6	34	78	14	87	73	5	3	17	1.17
306366--306406	21	1.9	22	85	5	57	75	4	9	9	1.17
306392--306470	39	2.1	37	83	9	97	73	7	6	12	1.24
306426--306477	23	2.3	24	83	9	65	75	5	3	15	1.14
306878--306939	20	3.2	19	76	21	65	75	6	6	11	1.17
307103--307168	21	3.2	20	75	16	55	72	6	4	16	1.21
307103--307148	19	2.4	19	81	3	56	71	6	6	15	1.27
307590--307631	15	2.8	16	85	7	61	85	0	4	9	0.72
307588--307830	7	30.1	7	68	22	58	74	4	6	15	1.18
307592--307705	34	3.3	34	70	11	88	75	3	6	14	1.13
307668--307708	17	2.5	17	84	11	50	82	4	2	9	0.89
307664--307716	13	3.8	13	75	9	52	83	3	5	7	0.92
307649--307718	31	2.3	31	77	18	74	80	2	5	11	1.00
307719--307756	19	2.0	20	84	5	51	65	7	10	15	1.45
307742--307799	17	3.4	17	76	11	64	74	5	1	18	1.10
307744--307823	35	2.4	34	80	14	94	75	5	3	16	1.13
307788--307836	22	2.1	24	82	14	59	77	4	6	12	1.09
307821--307869	23	2.1	22	82	14	55	71	4	10	14	1.27
307866--307926	23	2.7	23	82	7	72	73	6	4	14	1.20
307980--308027	19	2.5	19	77	12	53	68	0	8	22	1.16
308105--308143	19	2.1	19	90	0	60	74	0	12	12	1.08
308400--308515	19	6.2	19	70	22	68	75	3	5	16	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308591--308632	11	3.6	11	79	20	50	76	4	2	16	1.07
308628--308680	26	2.0	26	81	7	61	66	5	11	16	1.42
308862--308899	17	2.1	19	85	14	53	76	0	10	13	1.02
308938--308982	18	2.4	19	81	7	56	73	4	8	13	1.23
308948--308985	17	2.2	18	90	4	60	78	5	10	5	1.06
309062--309124	7	8.6	7	75	15	56	79	3	3	14	0.98
309062--309116	22	2.4	23	87	3	76	80	3	1	14	0.94
309035--309124	15	6.1	14	72	11	63	78	5	3	12	1.04
309177--309233	23	2.7	21	78	19	57	68	3	0	28	1.06
309185--309229	23	2.0	23	87	12	67	66	2	0	31	1.04
309390--309491	50	2.0	50	96	0	186	44	21	11	22	1.85
319971--320031	16	3.9	16	80	2	70	47	31	3	18	1.64
319971--320035	32	2.0	32	90	0	103	46	32	3	18	1.65
321534--321560	3	9.0	3	100	0	54	66	0	0	33	0.92
329449--329753	163	1.9	163	92	0	520	36	14	21	27	1.92
333028--333066	19	2.1	19	90	0	60	51	2	2	43	1.29
334330--334405	28	2.8	28	78	11	77	17	3	2	76	1.06
334330--334408	17	4.5	17	74	16	63	17	3	2	75	1.06
334832--334880	25	1.9	25	88	12	73	34	2	0	63	1.06
336815--336879	28	2.3	28	75	2	67	16	4	3	75	1.10
336833--336887	10	5.8	10	77	12	53	14	3	1	80	0.94
336832--336887	18	3.1	18	82	10	60	14	3	1	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336815--336884	29	2.4	30	76	9	74	15	4	2	77	1.05
336843--336909	19	3.4	19	78	19	59	14	4	5	74	1.17
337993--338037	19	2.3	20	88	3	65	75	4	2	17	1.07
338036--338069	16	2.3	14	90	10	50	67	0	8	23	1.18
338486--338562	27	2.6	28	79	18	70	79	2	6	11	1.02
338471--338601	70	1.9	69	81	9	158	75	2	6	15	1.11
338676--338735	22	2.7	22	80	14	54	75	6	5	13	1.18
339179--339235	20	2.8	20	73	21	55	77	1	8	12	1.07
339336--339402	20	3.7	20	66	24	58	80	5	0	13	0.88
339341--339417	42	1.9	40	82	12	95	77	5	1	15	1.00
339336--339413	34	2.3	34	84	2	102	79	5	1	14	0.96
339535--339571	15	2.7	14	88	12	51	75	2	5	16	1.10
339624--339669	22	2.0	22	83	4	56	67	2	15	15	1.33
340068--340105	16	2.4	17	82	13	53	73	2	13	10	1.19
340124--340201	7	10.9	7	73	10	50	76	2	6	14	1.08
340117--340201	8	10.4	8	72	11	57	76	3	5	14	1.11
340143--340201	15	3.9	15	76	14	50	74	3	8	13	1.17
340552--340594	16	2.8	15	79	6	50	81	4	11	2	0.93
341114--341139	9	2.9	9	100	0	52	80	7	0	11	0.89
341487--341524	17	2.2	17	86	9	51	78	7	5	7	1.07
341931--342067	19	7.3	18	67	24	61	78	3	5	13	1.06
341991--342056	17	4.3	16	78	12	68	83	4	3	9	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341936--342057	8	13.8	8	70	17	64	78	4	4	12	1.05
342128--342187	22	2.7	23	82	10	63	75	6	5	13	1.18
342368--342413	17	2.6	17	83	16	58	69	4	2	23	1.17
342368--342412	18	2.5	18	78	10	56	71	4	2	22	1.15
342532--342565	11	3.1	11	91	0	50	73	0	2	23	0.97
342534--342600	15	4.5	15	73	24	54	71	0	5	22	1.07
342540--342599	17	3.6	16	72	20	52	71	0	6	21	1.08
342716--342790	11	6.5	12	72	20	54	77	2	4	16	1.03
342720--342790	24	2.8	25	79	8	74	77	2	4	15	1.04
343201--343245	20	2.2	20	84	0	54	82	4	4	8	0.94

Tables:   1   2   3   4   5   6   7   8