genome.fa.s301.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168126.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_37, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  424845

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 851 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54826--55820	352	2.8	352	79	8	928	38	8	9	42	1.69
55499--55882	181	2.1	181	80	1	430	39	11	9	39	1.74
55750--56029	145	1.9	145	82	5	343	41	8	9	40	1.68
55870--57234	181	7.6	179	76	8	1072	41	9	9	40	1.69
56561--56609	17	2.8	18	78	15	57	44	6	10	38	1.63
56559--56609	18	2.8	18	75	22	54	43	5	11	39	1.66
55896--57147	544	2.3	535	80	6	1337	41	8	9	40	1.69
61009--61101	22	4.3	21	71	22	68	47	2	1	49	1.20
61165--61210	24	2.0	23	82	4	56	43	2	4	50	1.34
62021--62077	21	2.7	21	86	8	71	54	0	0	45	0.99
62041--62197	6	26.7	6	66	20	50	47	4	0	47	1.27
62358--62402	22	2.1	21	87	4	63	46	4	4	44	1.43
62954--63002	13	3.6	14	77	17	50	48	0	2	48	1.12
63066--63160	17	5.2	17	72	16	75	52	1	0	46	1.07
63065--63173	37	2.9	36	71	19	91	52	0	0	46	1.06
64148--64198	26	2.0	25	85	11	68	49	0	0	50	1.00
64268--64326	27	2.1	28	82	14	70	52	1	1	44	1.21
64290--64343	28	1.9	28	81	7	65	51	1	1	44	1.22
65087--65118	16	2.1	16	88	11	50	53	0	0	46	1.00
65602--65678	24	3.2	24	73	14	70	49	2	0	48	1.15
65654--65719	23	2.8	23	80	15	73	60	1	0	37	1.06
65674--65733	28	2.2	26	80	14	68	60	1	1	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65792--65859	26	2.6	28	72	27	69	51	2	0	45	1.16
66411--66481	13	5.5	13	70	20	60	43	1	1	53	1.18
66680--66712	13	2.4	14	90	10	50	42	6	0	51	1.26
67163--67215	19	2.8	19	82	8	63	50	0	3	45	1.19
67952--68052	9	10.8	9	68	27	52	43	0	0	55	1.06
67952--68016	5	13.6	5	73	20	50	43	0	0	56	0.99
67958--68000	17	2.5	17	82	10	52	44	0	0	55	0.99
67952--68007	17	3.1	17	73	21	51	42	0	0	57	0.99
67955--68046	12	8.1	11	69	23	50	44	0	1	54	1.07
67952--68086	57	2.4	58	79	12	147	44	0	2	51	1.21
68533--68574	22	1.9	22	85	9	59	57	0	0	42	0.99
68947--69015	11	5.7	12	75	21	56	47	0	1	50	1.09
68959--69059	6	17.5	6	71	23	58	51	1	0	46	1.12
69617--69717	40	2.4	40	80	9	105	46	4	0	47	1.30
69618--69740	41	2.9	44	77	10	98	43	4	1	49	1.33
70282--70350	34	2.0	36	83	11	90	39	1	4	55	1.29
70400--70482	40	2.1	40	82	8	98	44	0	1	54	1.08
70411--70503	17	4.8	20	70	19	65	44	1	2	52	1.20
70934--70959	9	2.9	9	100	0	52	57	0	0	42	0.98
71386--71440	27	2.0	28	86	10	78	49	0	1	49	1.11
71545--71601	26	2.3	25	78	6	62	42	0	1	56	1.10
71632--71746	9	12.4	9	68	23	53	44	1	1	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71691--71734	20	2.1	21	88	12	65	45	0	0	54	0.99
71699--71762	32	2.1	31	85	8	87	46	0	1	51	1.10
71793--71826	18	1.9	17	88	5	50	41	2	5	50	1.42
71797--71835	18	2.2	18	85	0	51	46	2	5	46	1.38
72423--72478	29	1.9	29	82	13	71	44	0	3	51	1.18
72592--72629	19	1.9	19	89	5	58	44	0	0	55	0.99
72718--72777	9	6.3	9	77	7	57	48	0	0	51	1.00
72720--72763	20	2.1	21	88	12	65	45	0	0	54	0.99
72728--72788	30	2.0	31	84	9	81	45	0	1	52	1.10
72718--72790	36	2.0	38	81	10	89	46	0	1	52	1.09
72932--72962	11	2.8	11	90	0	53	45	0	0	54	0.99
73592--73629	15	2.5	15	84	12	51	44	0	7	47	1.32
73795--73833	19	2.1	19	85	9	53	48	2	2	46	1.29
74573--74635	21	3.0	22	84	13	80	47	0	1	50	1.10
74589--74653	31	2.2	31	83	8	82	46	1	0	52	1.10
74585--74645	21	2.9	21	83	13	65	47	1	0	50	1.10
74616--74700	15	5.5	15	74	19	61	43	1	3	51	1.26
74789--74852	28	2.2	28	81	8	76	42	0	1	56	1.09
74967--75012	23	2.0	23	83	8	58	52	4	0	43	1.21
75121--75193	6	12.2	6	76	11	60	50	2	0	46	1.15
75115--75188	9	8.3	9	81	15	84	52	2	0	44	1.15
76135--76189	16	3.4	16	72	22	53	45	1	0	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76236--76273	20	2.0	18	90	10	58	50	0	0	50	1.00
76521--76547	14	1.9	14	100	0	54	48	0	0	51	1.00
77341--77441	23	4.6	23	70	18	56	49	0	0	48	1.14
77426--77479	23	2.3	23	74	0	54	46	0	1	51	1.11
77837--77878	15	2.7	15	82	13	50	54	2	0	42	1.13
77891--77972	31	2.6	34	75	19	81	43	0	6	50	1.27
77985--78025	20	2.0	20	85	9	55	48	0	0	51	1.00
79043--79115	17	4.5	17	66	26	50	39	1	0	58	1.06
80657--80715	28	2.2	27	84	6	75	52	0	3	44	1.17
82055--82280	13	17.6	13	65	26	76	47	2	0	49	1.19
82059--82141	6	13.7	6	69	20	57	48	3	0	48	1.19
82059--82095	19	1.9	19	94	0	65	43	2	0	54	1.14
82148--82206	15	3.8	16	78	17	63	42	1	0	55	1.09
82135--82209	32	2.3	32	80	8	82	41	1	1	56	1.16
82244--82290	17	2.8	17	81	12	60	53	0	0	46	1.00
82390--82437	24	2.0	24	84	4	62	54	0	4	41	1.20
82374--82439	23	3.0	22	78	8	62	50	3	4	42	1.38
83051--83111	25	2.5	24	81	10	61	49	3	0	47	1.18
84014--84298	156	1.8	158	79	3	333	40	10	8	41	1.68
84527--84564	17	2.2	17	86	9	51	42	0	2	55	1.14
85179--85223	18	2.5	18	81	0	54	40	6	0	53	1.27
85468--85522	23	2.3	24	84	12	69	45	1	3	49	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85664--85729	10	6.2	10	72	18	53	45	3	1	50	1.26
85856--85894	18	2.2	18	85	0	51	51	2	5	41	1.38
86997--87167	20	7.9	22	68	24	64	52	2	1	43	1.21
87088--87142	27	2.0	28	86	13	78	52	0	0	47	1.00
87229--87254	12	2.2	12	100	0	52	61	0	0	38	0.96
87282--87324	22	2.0	22	85	0	59	55	0	2	41	1.12
87497--87561	15	3.9	17	78	11	57	49	1	1	47	1.20
87571--87616	23	1.9	25	82	8	60	52	2	4	41	1.33
87692--87730	21	1.9	20	89	5	60	51	5	2	41	1.38
87714--87772	18	3.4	17	79	13	66	52	1	0	45	1.10
87714--87800	35	2.6	33	82	10	99	50	2	0	47	1.13
87743--87799	18	2.9	19	73	23	55	49	1	0	49	1.11
87720--87799	19	3.7	22	73	20	62	50	2	0	47	1.14
88481--88543	25	2.5	26	82	12	78	47	4	3	44	1.40
88875--88935	21	2.9	22	78	7	72	45	0	1	52	1.10
89001--89333	175	1.9	173	80	3	382	42	9	8	40	1.67
90680--90721	16	2.7	16	79	17	52	59	2	0	38	1.10
90755--90809	13	4.1	13	82	13	58	50	0	0	49	1.00
90766--90807	15	2.8	15	86	13	52	54	0	0	45	0.99
90763--90968	10	18.5	11	64	24	51	50	1	2	46	1.23
90778--90853	24	3.1	24	66	9	64	51	0	5	43	1.24
91467--91498	14	2.4	14	94	5	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91488--91539	24	2.2	24	83	13	63	42	5	3	48	1.45
91615--91672	25	2.4	25	82	5	75	56	1	1	39	1.19
91666--91759	39	2.4	39	80	16	106	51	2	2	44	1.25
92130--92164	19	1.9	18	88	11	54	48	0	5	45	1.26
92414--92469	21	2.7	20	78	10	58	48	0	0	51	1.00
92437--92514	9	8.7	9	70	26	51	42	1	0	56	1.07
92810--92858	22	2.1	24	85	7	66	51	2	2	44	1.24
93843--93875	13	2.6	13	90	4	50	45	3	0	51	1.16
94021--94062	21	2.0	21	86	9	59	40	2	0	57	1.12
94074--94126	17	3.1	17	79	12	56	54	1	0	43	1.11

Tables:   1   2   3   4   5   6   7   8