genome.fa.s301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168126.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_37, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  424845

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 851 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226--285	28	2.2	25	75	18	66	36	1	1	60	1.17
240--305	23	2.8	24	82	13	75	37	0	1	60	1.06
839--870	14	2.1	16	88	11	50	46	0	0	53	1.00
1613--1674	32	2.0	31	87	9	90	48	0	1	50	1.10
1638--1686	24	2.0	25	84	11	66	44	2	2	51	1.24
1613--1684	30	2.3	32	83	9	96	45	1	1	51	1.18
1742--1811	29	2.4	29	81	11	83	51	1	0	47	1.09
1922--1959	14	2.5	15	83	8	51	42	0	0	57	0.98
2805--2920	24	4.8	24	70	17	80	47	0	0	51	1.06
2972--3020	13	3.6	14	77	17	50	48	2	0	48	1.12
3909--3970	21	2.9	22	81	9	74	45	0	0	54	0.99
3915--3962	18	2.6	19	83	6	71	45	0	0	54	0.99
4867--4954	22	4.1	22	73	17	69	47	1	2	48	1.21
8718--10070	181	7.6	179	75	7	1043	40	9	9	41	1.69
9334--9384	17	2.8	19	77	17	63	39	11	5	43	1.66
8716--11118	361	6.8	359	73	10	991	40	9	9	40	1.70
9912--10190	145	1.9	144	82	7	343	40	9	8	40	1.69
10055--11169	181	6.2	182	76	8	923	41	10	8	38	1.71
10201--11062	352	2.4	359	81	8	974	41	10	8	39	1.70
11320--11401	10	8.0	10	72	19	55	41	1	1	56	1.15
11338--11400	25	2.6	25	75	12	60	42	1	1	53	1.19
11424--12931	175	8.5	178	74	9	1062	40	9	9	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11404--12901	181	8.4	178	73	10	726	40	9	9	40	1.70
11465--12930	533	2.7	524	77	8	1490	41	10	9	39	1.70
12699--13136	244	1.8	242	82	5	562	39	9	8	42	1.68
13113--13158	23	2.0	22	84	16	58	34	2	8	54	1.43
13465--13495	16	1.9	16	100	0	62	29	6	6	58	1.48
14137--14178	19	2.3	18	84	12	50	54	2	9	33	1.46
14476--14893	180	2.3	180	78	6	422	40	7	8	43	1.64
15833--15881	9	6.1	8	77	17	57	51	0	2	46	1.12
15834--15881	14	2.9	17	76	20	57	50	0	2	47	1.12
15832--15881	23	2.2	23	89	7	75	52	0	2	46	1.12
15916--15954	12	3.4	11	82	10	51	48	0	2	48	1.15
16866--16925	20	3.3	19	73	19	56	51	0	1	46	1.10
17037--17074	19	2.0	19	89	0	58	57	0	0	42	0.98
17235--17962	182	4.0	180	78	6	713	42	9	7	39	1.67
18265--18764	180	2.8	179	79	9	543	42	10	7	39	1.68
18068--18764	361	1.9	359	81	6	820	40	11	8	39	1.71
18597--18913	157	2.0	157	86	4	444	41	11	5	40	1.66
18754--19187	181	2.4	181	80	3	457	41	9	6	41	1.64
18445--19107	338	2.0	338	82	1	801	41	9	7	41	1.66
19425--19472	22	2.2	22	92	0	78	43	2	0	54	1.12
19457--19491	14	2.5	15	90	9	56	45	0	0	54	0.99
19429--19509	18	4.9	17	70	20	57	44	2	0	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20262--20603	179	1.9	180	81	3	411	40	9	9	40	1.70
20240--20797	180	3.1	180	76	4	412	40	8	8	41	1.66
21248--21286	12	3.0	13	88	7	53	56	2	0	41	1.13
21729--21783	18	3.0	18	76	12	58	54	3	0	41	1.18
22760--22792	17	1.9	17	88	11	50	39	0	0	60	0.97
23159--23189	16	2.0	15	93	6	53	61	0	0	38	0.96
24006--24035	11	2.6	11	94	5	51	46	0	0	53	1.00
24379--24408	14	2.1	14	93	0	51	46	3	0	50	1.18
24860--24890	14	2.2	14	94	0	53	48	3	0	48	1.17
24940--24964	13	1.9	13	100	0	50	52	0	8	40	1.31
25097--25294	80	2.5	77	85	13	264	48	2	1	47	1.22
25236--25277	21	2.0	21	86	9	59	57	2	0	40	1.12
25151--25266	26	4.3	28	71	20	97	49	2	0	47	1.21
25604--25642	18	2.3	18	86	8	55	41	0	7	51	1.31
25867--26041	92	1.9	92	83	0	224	46	10	10	33	1.72
26260--26313	14	3.6	15	83	13	67	44	0	3	51	1.19
26259--26317	31	1.9	31	89	6	93	44	0	3	52	1.17
26996--27046	25	2.0	26	88	7	79	58	7	13	19	1.59
28852--28915	18	3.4	18	77	12	58	45	0	4	50	1.22
29006--29064	15	3.6	16	77	22	52	54	1	0	44	1.10
29153--29215	24	2.5	25	78	17	60	44	0	0	55	0.99
29232--29644	180	2.3	180	80	5	431	37	6	9	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30235--30290	18	3.2	18	75	12	53	50	5	8	35	1.57
30150--30762	337	1.8	337	83	3	788	43	6	8	41	1.60
29863--30474	181	3.4	178	81	7	646	41	7	8	41	1.65
29972--30544	181	3.2	181	79	8	419	41	6	7	43	1.59
30580--30612	17	2.0	17	88	5	50	48	0	12	39	1.40
30330--30660	156	2.1	157	81	7	390	41	6	7	43	1.60
32214--32343	65	2.0	66	88	8	194	42	6	15	36	1.72
35434--36351	181	5.1	181	79	7	924	42	8	7	41	1.64
35930--35985	18	3.2	18	75	12	53	35	8	5	50	1.57
35434--37161	359	4.8	361	72	14	1114	43	9	7	39	1.65
37133--37180	24	2.0	24	84	8	62	60	2	6	31	1.33
37200--37253	24	2.2	24	75	18	58	55	0	0	44	0.99
37494--37557	18	3.4	18	77	12	58	50	4	0	45	1.22
38925--38975	26	2.0	26	88	7	79	19	13	7	58	1.59
39654--39712	31	1.9	31	89	6	93	52	3	0	44	1.17
39658--39711	14	3.6	15	83	13	67	51	3	0	44	1.19
40760--40822	11	5.2	13	71	25	50	53	1	0	44	1.10
40762--40817	22	2.6	22	86	13	73	53	1	0	44	1.11
40941--40965	13	1.9	13	100	0	50	40	8	0	52	1.31
41015--41045	14	2.2	14	94	0	53	48	0	3	48	1.17
41402--41491	44	2.1	44	80	14	98	56	3	2	37	1.28
41498--41527	14	2.1	14	93	0	51	50	0	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41870--41899	11	2.6	11	94	5	51	53	0	0	46	1.00
43081--43120	10	3.9	11	87	12	50	52	2	0	45	1.14
43088--43130	14	3.1	14	83	10	52	55	0	0	44	0.99
43107--43139	17	1.9	17	88	11	50	60	0	0	39	0.97
44113--44193	23	3.6	23	79	12	71	44	0	3	51	1.19
44127--44230	23	4.6	23	68	19	67	42	1	4	50	1.34
45266--45652	180	2.2	179	78	5	415	42	8	8	40	1.66
45695--46162	181	2.6	181	78	6	432	41	9	8	40	1.69
46434--46468	14	2.5	15	90	9	56	54	0	0	45	0.99
46416--46468	18	2.9	18	78	15	56	52	0	1	45	1.11
46453--46500	22	2.2	22	92	0	78	54	0	2	43	1.12
46738--47171	181	2.4	177	80	3	476	41	6	9	42	1.64
47249--47297	18	2.8	18	78	15	57	42	6	12	38	1.67
47012--47328	157	2.0	157	86	3	442	41	5	11	41	1.66
46823--47507	338	2.0	338	82	2	813	41	7	9	41	1.65
47163--47646	180	2.7	178	81	6	530	40	7	10	41	1.67
47161--47646	181	2.7	178	80	8	545	40	6	10	41	1.66
47948--48669	182	4.0	181	77	7	606	39	8	9	42	1.67
48828--48865	19	2.0	19	89	0	58	42	0	0	57	0.98
49962--50000	12	3.3	12	85	3	53	48	2	0	48	1.15
50035--50078	23	2.0	22	90	4	70	45	2	0	52	1.13
50786--51249	255	1.8	254	82	2	599	42	10	7	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51025--51562	180	3.0	177	76	7	521	43	8	7	40	1.64
52416--52446	16	1.9	16	100	0	62	58	6	6	29	1.48
52752--52797	23	2.0	22	84	16	58	54	8	2	34	1.43
52979--54495	536	2.8	536	78	8	1424	40	9	9	40	1.70
52979--54484	179	8.4	178	75	6	1040	40	9	9	40	1.70
53009--54513	181	8.4	181	75	7	1069	40	9	9	40	1.70
54539--54582	19	2.3	20	84	11	65	50	0	2	47	1.13
54552--54585	13	2.7	13	90	4	52	50	0	0	50	1.00
54574--54613	21	1.9	21	89	0	62	50	5	0	45	1.23
54772--55820	181	5.9	179	74	8	775	38	8	10	42	1.69

Tables:   1   2   3   4   5   6   7   8