genome.fa.s301.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168126.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_37, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  424845

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 851 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155688--156529	354	2.4	353	83	4	978	40	10	7	40	1.68
155688--157068	354	3.9	353	76	8	942	41	9	7	40	1.68
156267--156818	176	3.1	176	82	3	500	42	8	7	40	1.65
155729--157086	534	2.5	529	81	6	1435	41	10	7	40	1.68
157061--157134	36	2.1	36	92	0	121	48	6	4	40	1.48
157171--157486	171	1.8	171	81	4	386	40	10	8	40	1.70
158224--158273	13	3.9	13	76	12	50	52	2	0	46	1.12
158444--158477	17	1.9	18	88	5	52	55	0	0	44	0.99
158567--158608	22	2.0	20	82	17	50	54	2	2	40	1.26
158666--158745	23	3.4	23	77	10	81	57	1	2	38	1.20
158841--158889	18	2.5	20	77	19	57	40	4	0	55	1.19
159195--159233	19	2.1	19	85	9	53	46	2	2	48	1.29
159489--161750	181	12.6	177	75	6	1528	40	8	10	40	1.70
159489--161520	361	5.7	358	76	7	1263	40	8	10	40	1.70
159532--162791	542	6.1	538	74	9	2054	39	8	10	42	1.69
163185--163220	14	2.7	13	87	8	54	55	0	0	44	0.99
163277--163310	16	2.1	16	94	0	59	52	0	0	47	1.00
163707--163797	36	2.5	36	81	12	98	49	2	0	48	1.13
163737--163808	35	2.1	35	84	10	94	50	2	0	47	1.15
163880--164001	14	8.8	14	66	27	57	47	2	0	50	1.14
163927--164032	55	1.9	56	81	12	130	49	1	1	47	1.23
164311--164360	9	5.7	9	72	13	50	48	2	4	46	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164434--164463	14	2.1	15	93	6	53	40	0	0	60	0.97
164920--164975	25	2.2	25	82	17	71	50	1	0	48	1.11
165576--165625	19	2.7	19	80	20	61	44	0	2	54	1.11
167863--167901	19	2.0	20	85	5	53	46	0	0	53	1.00
168269--168308	13	2.9	14	81	11	55	45	0	0	55	0.99
168579--168634	17	3.4	17	73	16	55	51	0	0	48	1.00
168825--168874	14	3.6	14	76	15	50	50	0	0	50	1.00
168808--168863	19	3.1	19	78	14	64	48	0	0	51	1.00
168882--168931	20	2.5	20	80	0	55	52	2	0	46	1.12
169254--169299	19	2.3	20	75	14	51	39	0	2	58	1.10
169268--169312	24	1.9	23	86	4	63	40	2	2	55	1.24
169528--169585	18	3.3	18	77	15	50	43	3	1	51	1.28
169957--170012	24	2.5	22	82	11	60	55	1	0	42	1.10
170182--170281	15	7.1	13	71	19	51	48	1	1	50	1.14
170189--170227	15	2.8	14	88	7	53	56	2	0	41	1.13
170223--170324	24	4.1	25	71	18	63	44	0	0	53	1.13
170845--170892	25	1.9	25	82	0	60	50	2	2	45	1.25
171011--171072	26	2.3	29	81	13	80	48	3	1	46	1.28
171020--171078	26	2.1	29	81	9	70	47	3	3	45	1.36
171213--171301	4	21.8	4	71	22	53	48	1	0	50	1.08
171261--171331	16	4.6	15	75	16	56	45	1	0	53	1.09
171218--171328	20	5.2	20	72	21	82	45	1	0	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171713--171748	17	2.1	17	89	0	54	52	0	0	47	1.00
171769--171807	20	2.0	20	84	0	51	38	5	2	53	1.37
171924--171976	21	2.5	22	75	19	60	45	0	5	49	1.26
171946--171991	15	3.1	15	82	11	51	47	0	2	50	1.13
172076--172124	12	4.2	12	75	17	50	57	0	0	42	0.99
172077--172131	14	3.9	14	78	19	51	54	0	0	45	0.99
172305--172354	19	2.5	21	75	18	52	46	0	4	50	1.20
172410--172457	13	3.5	13	81	15	60	47	2	4	45	1.33
173343--173416	16	5.0	16	72	19	54	48	1	1	48	1.18
173585--173626	13	3.2	13	80	10	50	45	0	0	54	0.99
173804--173871	25	2.8	23	81	14	84	51	0	0	48	1.00
173810--173908	16	5.9	17	65	22	50	52	0	0	47	1.00
173803--173907	31	3.6	31	68	19	82	52	0	0	47	1.00
173813--173908	26	3.5	26	76	19	90	52	0	0	47	1.00
173811--173938	58	2.3	57	81	10	147	50	1	0	46	1.16
174912--174984	24	3.1	22	75	13	58	47	0	2	49	1.15
174932--174998	21	3.0	20	73	16	53	52	0	2	44	1.16
175146--175211	27	2.3	27	82	12	71	54	0	4	40	1.21
175167--175212	23	2.0	24	86	4	67	56	0	2	41	1.11
175171--175213	19	2.3	18	84	8	50	55	0	2	41	1.12
175252--175312	22	2.8	21	78	14	54	57	0	1	40	1.08
175431--175487	17	3.2	17	76	11	60	50	0	3	45	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175620--175674	21	2.8	18	82	15	65	47	1	5	45	1.36
175736--175780	17	2.7	17	83	10	58	46	4	2	46	1.35
175772--175822	21	2.4	21	80	3	57	45	5	3	45	1.46
175812--175882	25	3.0	24	74	24	69	46	0	0	53	1.00
175817--175864	20	2.3	21	82	13	55	47	0	0	52	1.00
175824--175875	20	2.6	21	71	28	51	48	0	0	51	1.00
175847--175907	22	2.7	23	80	14	74	45	0	0	54	1.00
175994--176052	29	2.0	30	86	6	84	49	0	3	47	1.18
176121--176155	18	1.9	18	88	0	52	42	2	2	51	1.31
176287--176329	21	2.2	19	83	8	50	55	0	0	44	0.99
176457--176499	19	2.2	20	84	12	54	58	4	2	34	1.32
176443--176504	23	2.5	25	73	17	58	56	3	1	38	1.25
176491--176532	21	2.0	20	86	13	57	42	0	0	57	0.99
176855--177380	181	2.9	176	77	7	479	39	10	9	40	1.71
177167--177743	301	1.9	301	82	4	725	38	11	8	42	1.71
177481--177827	181	1.9	182	81	2	421	42	11	7	39	1.69
178575--178617	21	2.0	23	86	9	63	55	4	2	37	1.33
179309--179352	21	2.2	20	83	4	52	34	11	11	43	1.77
180660--180710	26	2.0	25	85	11	68	49	0	0	50	1.00
180780--180837	27	2.1	27	84	12	75	51	1	1	44	1.21
181596--181627	16	2.1	16	88	11	50	53	0	0	46	1.00
182111--182187	24	3.2	24	73	14	70	49	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182163--182228	23	2.8	23	80	15	73	60	1	0	37	1.06
182183--182242	28	2.2	26	80	14	68	60	1	1	36	1.17
182302--182369	26	2.6	28	72	27	69	51	2	0	45	1.16
182921--182991	13	5.5	13	70	20	60	43	1	1	53	1.18
183190--183222	13	2.4	14	90	10	50	42	6	0	51	1.26
183665--183708	22	2.0	21	87	12	63	54	0	4	40	1.21
184455--184559	9	12.0	9	68	26	50	42	0	0	56	1.06
184455--184559	45	2.4	41	77	16	106	42	0	0	56	1.06
184456--184524	29	2.3	30	83	14	90	42	0	0	57	0.98
184455--184524	19	3.6	19	78	16	72	42	0	0	57	0.99
184458--184524	11	5.7	12	74	22	54	41	0	0	58	0.98
184456--184546	45	2.0	45	81	12	107	42	0	1	56	1.06
184456--184525	9	7.0	11	73	20	57	41	0	0	58	0.98
184484--184550	13	4.6	14	76	18	57	40	0	1	58	1.07
184642--184709	22	3.2	22	72	19	81	51	0	4	44	1.21
184631--184719	41	2.2	41	97	0	169	55	0	5	39	1.24
184630--184694	19	3.3	19	72	19	69	58	0	4	36	1.19
184631--184729	41	2.4	41	91	3	137	53	1	6	39	1.32
184847--184884	15	2.5	15	84	12	51	44	0	7	47	1.32
185047--185085	19	2.1	19	85	9	53	48	2	2	46	1.29
185824--185886	21	3.0	22	84	13	80	47	0	1	50	1.10
185840--185904	31	2.2	31	83	8	82	46	1	0	52	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185921--185958	17	2.2	17	86	9	51	44	0	0	55	0.99
186046--186109	14	4.4	16	76	21	61	40	0	4	54	1.21
186310--186367	23	2.6	23	79	17	68	48	1	0	50	1.11
186433--186480	9	5.2	9	76	14	53	47	0	0	52	1.00
186422--186473	17	3.1	17	75	10	54	46	0	0	53	1.00
186422--186474	16	3.1	19	71	20	53	47	0	0	52	1.00
186539--186609	7	10.7	7	78	11	53	50	1	2	45	1.25
187841--187893	23	2.3	24	83	6	65	56	0	0	43	0.99
187941--187981	21	2.0	21	85	9	57	58	0	0	41	0.98
188831--189304	181	2.6	179	79	5	506	42	7	9	40	1.66

Tables:   1   2   3   4   5   6   7   8