genome.fa.s301.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168126.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_37, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  424845

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 851 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343201--343257	19	3.0	18	75	12	51	78	3	7	10	1.05
343372--343414	16	2.7	16	79	10	52	72	0	6	20	1.08
343479--343553	19	4.0	18	72	8	69	78	2	5	13	1.02
343479--343529	9	5.3	10	82	13	63	80	0	3	15	0.86
343518--343560	13	3.3	13	80	9	52	79	6	4	9	1.06
343788--343848	24	2.6	23	79	10	61	72	1	3	22	1.09
343808--343937	29	4.7	26	78	16	104	73	2	4	19	1.11
343809--343907	30	3.6	29	80	11	93	73	1	6	19	1.09
343808--343919	25	4.3	25	74	19	86	74	1	5	18	1.10
343861--343902	17	2.4	17	80	11	50	76	0	4	19	0.96
343883--343932	14	3.5	15	74	17	52	78	4	0	18	0.91
343827--343937	28	4.1	24	71	21	69	74	2	3	18	1.08
345937--345984	19	2.7	18	78	15	55	72	0	10	16	1.10
346236--346303	18	3.7	18	71	11	57	79	2	8	8	1.03
346526--346559	12	2.7	13	86	9	52	82	0	0	17	0.67
346673--346745	23	3.4	21	71	21	62	71	2	8	17	1.23
347103--347144	19	2.2	20	83	8	52	69	4	11	14	1.34
347168--347214	25	1.9	24	82	4	58	72	4	4	19	1.18
347133--347239	44	2.4	44	79	3	108	72	5	5	15	1.22
347404--347437	12	2.8	12	86	4	50	76	5	0	17	0.98
347622--347662	17	2.4	17	91	4	64	78	0	12	9	0.98
347888--347922	14	2.5	14	90	0	52	85	0	0	14	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347877--347935	24	2.5	24	82	0	64	81	1	3	13	0.90
347884--348025	8	16.4	8	68	18	63	76	3	5	14	1.11
348537--348636	18	5.4	19	70	23	61	73	3	6	18	1.17
348493--348591	18	5.2	17	75	17	63	74	4	6	15	1.16
348557--348590	11	3.0	11	86	4	50	85	2	2	8	0.80
349884--349922	19	2.1	19	90	0	60	43	2	2	51	1.29
351191--351288	33	3.0	32	70	14	76	72	4	6	17	1.21
351534--351572	17	2.2	17	86	4	51	79	0	10	10	0.94
352017--352114	50	2.0	49	87	2	142	27	9	29	33	1.88
355580--355884	163	1.9	163	92	0	511	27	22	14	35	1.93
363552--363585	16	2.1	16	100	0	68	47	5	23	23	1.73
363783--363809	3	9.0	3	100	0	54	33	0	0	66	0.92
365310--365363	16	3.4	16	77	10	56	16	3	31	48	1.64
365310--365374	32	2.0	32	93	0	112	16	4	32	46	1.68
365323--365374	16	3.2	16	83	0	77	15	3	32	48	1.63
368580--368622	22	2.0	22	90	0	68	6	6	53	32	1.55
376109--376153	22	2.0	22	100	0	90	4	4	26	64	1.32
377249--377349	50	2.0	50	94	0	175	23	11	18	45	1.83
377649--377687	15	2.6	14	84	11	51	15	2	2	79	0.95
377649--377687	7	5.3	7	82	11	51	15	2	2	79	0.95
377753--377790	16	2.3	17	86	4	51	7	7	7	76	1.17
377750--377800	18	2.9	16	88	11	66	7	7	7	76	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377761--377791	16	1.9	16	93	0	53	6	9	6	77	1.12
377750--377810	18	3.4	17	80	11	52	13	6	6	73	1.22
377955--377993	20	2.0	20	85	10	53	12	10	0	76	1.01
378118--378184	9	6.6	10	88	8	68	22	0	1	76	0.87
378120--378178	11	5.5	11	84	15	56	22	0	1	76	0.88
378119--378184	24	3.1	22	79	20	70	21	0	1	77	0.85
378141--378184	9	4.7	9	91	8	70	20	0	2	77	0.88
378248--378367	6	19.3	6	72	17	61	17	4	2	75	1.07
378248--378367	37	3.2	35	73	16	84	17	4	2	75	1.07
378308--378367	31	2.0	29	84	12	77	15	5	1	78	1.00
378307--378368	17	3.4	19	72	26	53	16	6	1	75	1.08
378521--378562	17	2.4	17	81	14	50	14	7	7	71	1.29
378724--378753	15	2.0	15	93	0	51	10	13	0	76	1.01
378766--378813	19	2.6	18	78	15	53	20	8	2	68	1.26
377739--381400	784	4.8	750	83	10	4224	17	9	4	68	1.33
379070--379140	23	3.0	23	78	12	81	14	4	2	78	1.01
378880--379105	29	7.4	29	64	22	72	15	7	3	72	1.22
379373--379453	40	2.1	40	86	9	114	12	8	6	72	1.26
379670--379713	22	2.0	22	86	8	63	18	4	6	70	1.27
379675--379743	20	3.3	20	80	11	68	14	5	2	76	1.08
379697--379748	19	2.7	18	79	11	50	13	7	1	76	1.07
379828--379892	20	3.2	20	78	10	69	16	4	4	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380416--380481	19	3.2	20	81	12	64	18	3	4	74	1.12
380504--380583	7	10.9	7	73	15	54	16	5	3	75	1.13
380552--380654	15	6.4	16	70	20	56	14	3	3	77	1.05
380572--380667	23	4.5	22	72	13	83	14	4	3	78	1.03
380672--380712	20	2.0	20	85	4	55	17	7	2	73	1.17
380674--380715	22	1.9	22	85	9	59	14	7	2	76	1.10
379396--381400	741	2.7	737	88	5	2835	17	9	4	68	1.34
381182--381230	19	2.7	17	73	14	53	10	2	8	79	1.01
381313--381362	20	2.5	20	83	6	57	22	2	4	72	1.12
381331--381380	20	2.5	20	80	6	57	16	4	6	74	1.17
381409--381469	29	2.1	29	81	6	70	13	3	9	73	1.20
381526--381563	18	2.1	18	90	0	58	10	15	7	65	1.45
379420--382108	707	3.7	713	86	9	3085	17	9	4	68	1.35
381892--381949	30	2.0	29	86	3	80	12	3	6	77	1.09
381889--381937	19	2.7	17	73	14	53	10	2	8	79	1.01
381892--381984	38	2.4	37	81	13	100	10	6	4	78	1.07
381892--381964	30	2.4	30	80	8	78	12	5	5	76	1.12
382267--382295	12	2.5	12	94	5	51	6	17	58	17	1.59
382585--382619	15	2.3	15	100	0	70	11	5	22	60	1.52
393515--393557	22	2.0	22	90	0	68	6	2	25	65	1.30
393568--393619	22	2.4	22	96	0	95	23	26	9	40	1.85
394660--394761	50	2.0	50	90	0	159	24	10	18	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396027--396901	343	2.6	345	90	1	1327	45	22	8	22	1.80
396367--399064	870	3.1	868	90	3	4210	44	21	10	22	1.83
406878--406925	20	2.4	20	96	0	87	16	31	18	33	1.94
409391--409447	17	3.2	17	73	14	53	71	5	3	19	1.19
409435--409583	7	19.3	7	67	20	50	73	5	7	14	1.23
409534--409582	23	2.2	23	82	10	57	75	6	4	14	1.14
410008--410052	21	2.2	21	88	7	67	62	4	13	20	1.48
410017--410063	21	2.2	22	84	3	60	68	2	8	21	1.27
410087--410153	18	3.9	17	75	7	55	71	4	4	19	1.20
410371--410417	25	2.0	23	83	8	58	65	2	14	17	1.36
409916--411163	610	2.0	627	89	6	1942	68	4	9	16	1.35
410607--410641	8	4.2	8	96	3	61	88	0	0	11	0.51
410607--410726	16	6.8	17	71	11	64	75	3	4	16	1.09
409338--410653	706	1.9	695	83	10	1739	68	5	10	16	1.36
410679--410727	20	2.4	21	76	10	57	73	6	4	16	1.19
410819--410864	19	2.4	19	81	0	56	78	8	2	10	1.05
411172--411214	18	2.3	19	80	8	52	69	4	6	18	1.29
411182--411220	18	2.2	18	90	0	60	74	5	10	10	1.21
411306--411353	8	5.9	8	87	7	62	85	0	4	10	0.73
411520--411574	28	2.0	28	92	0	92	76	5	3	14	1.10
411522--411546	11	2.3	11	100	0	50	84	8	0	8	0.79
411523--411577	17	3.1	18	78	19	62	78	7	1	12	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410527--413279	711	3.9	707	81	14	2886	67	4	9	17	1.36
412098--412147	15	3.4	15	78	10	50	78	4	8	10	1.09
412039--412141	53	1.9	53	81	11	122	73	2	5	17	1.15
412262--412322	18	3.2	19	81	9	70	73	4	3	18	1.14
412610--412650	17	2.3	18	91	4	66	73	7	9	9	1.26
412664--412703	21	2.0	20	85	14	55	67	0	15	17	1.23
412848--412899	20	2.6	19	82	11	59	76	7	1	13	1.07
412972--413039	20	3.2	20	78	12	64	76	4	4	14	1.10
413379--413421	20	2.2	20	87	8	61	74	4	9	11	1.20
413622--413648	11	2.5	11	100	0	54	88	0	0	11	0.50

Tables:   1   2   3   4   5   6   7   8