genome.fa.s312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168137.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_38, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  382840

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 864 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62--99	20	1.9	20	84	10	51	34	0	5	60	1.19
1199--2206	181	5.6	179	78	5	783	41	8	7	41	1.65
1231--2125	362	2.5	359	81	4	939	41	8	7	41	1.65
2569--2653	21	4.0	22	79	18	83	50	1	0	48	1.08
2573--2609	10	3.6	10	85	7	56	51	0	0	48	1.00
2577--2679	19	5.4	19	73	15	79	48	1	0	49	1.12
2763--2839	14	5.6	14	75	15	63	38	1	5	54	1.31
2804--2892	45	1.9	45	84	13	119	39	1	2	57	1.19
4149--4206	20	3.0	20	78	14	77	51	0	0	48	1.00
4132--4206	37	2.0	37	87	5	107	52	0	1	46	1.09
4153--4188	17	2.1	17	89	0	54	52	0	0	47	1.00
4178--4227	23	2.2	23	82	7	57	54	0	2	44	1.11
4314--4368	21	2.8	19	77	20	60	45	1	5	47	1.36
4818--4852	17	2.2	17	90	10	56	51	2	0	45	1.16
4984--5037	23	2.3	24	87	6	76	53	1	1	42	1.22
6610--7327	176	4.0	177	81	4	764	39	8	10	41	1.69
7468--7552	30	2.9	30	75	8	84	49	2	0	48	1.14
7479--7636	47	3.1	49	79	14	144	46	1	0	51	1.12
7531--7637	47	2.2	48	86	11	155	43	1	0	54	1.11
7556--7638	22	3.5	22	70	15	60	45	1	0	53	1.08
7555--7639	16	5.2	17	71	23	67	45	1	0	52	1.08
7531--7637	49	2.2	49	86	11	157	43	1	0	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7853--7912	21	2.9	21	69	16	52	35	1	6	56	1.35
8818--8849	15	2.0	17	88	11	50	53	3	0	43	1.16
9115--9197	21	3.8	20	73	17	69	54	1	1	43	1.16
9122--9158	10	3.6	10	85	7	56	51	0	0	48	1.00
9337--9406	23	3.2	21	73	19	63	40	0	1	58	1.07
9334--9420	43	1.9	43	84	13	113	40	1	2	56	1.19
9331--9405	26	3.0	26	74	18	77	40	0	1	58	1.06
10650--10697	17	2.6	18	80	9	53	50	0	2	47	1.12
10665--10713	20	2.5	20	86	0	62	53	0	2	44	1.12
10780--10834	21	2.8	19	77	20	60	45	1	5	47	1.36
11046--11096	26	2.0	26	85	14	70	52	0	0	47	1.00
11041--11095	14	3.9	14	78	19	51	52	0	0	47	1.00
11050--11112	30	2.1	30	85	5	83	49	0	3	47	1.17
11145--11214	8	8.6	8	75	22	58	44	0	1	54	1.09
11165--11253	33	2.7	32	77	8	90	43	2	2	51	1.26
11333--11367	17	2.2	17	90	10	56	51	0	0	48	1.00
11324--11388	23	2.8	22	76	17	69	50	0	1	47	1.10
11305--11372	30	2.3	30	80	19	88	50	0	1	48	1.10
18691--18744	28	1.9	28	84	0	72	48	3	1	46	1.30
18892--18973	19	4.2	20	67	22	50	47	3	0	48	1.19
18956--18997	22	2.0	21	85	4	57	47	2	0	50	1.14
18987--19036	19	2.6	19	78	9	57	42	2	4	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19168--19205	16	2.4	16	91	4	60	50	2	2	44	1.30
19329--19478	13	11.5	13	68	22	66	50	2	1	46	1.21
19426--19472	20	2.5	19	86	10	69	53	0	2	44	1.12
19669--19718	23	2.2	23	85	0	64	42	2	4	52	1.31
20259--20318	19	3.2	19	79	9	52	43	1	3	51	1.28
20343--20431	28	3.2	28	73	12	78	46	2	1	50	1.21
20970--21073	48	2.1	49	77	15	108	50	3	1	43	1.31
21977--22033	9	6.9	8	75	13	53	49	1	0	49	1.11
21984--22031	16	2.9	16	81	12	62	52	2	0	45	1.12
22875--22901	14	1.9	14	100	0	54	29	0	3	66	1.09
22911--22939	14	2.1	14	93	6	51	58	0	0	41	0.98
23057--23091	19	1.9	17	88	11	52	34	2	0	62	1.10
23108--23163	18	3.2	18	78	19	64	51	0	1	46	1.11
23331--23372	18	2.4	18	80	4	50	50	4	0	45	1.23
23375--23416	21	2.0	21	90	0	66	61	0	4	33	1.17
24707--24765	20	2.8	20	70	14	57	52	0	1	45	1.10
24947--24976	10	3.1	10	95	4	53	46	0	0	53	1.00
25150--25182	13	2.4	14	85	10	50	48	3	3	45	1.33
25199--25244	10	4.2	11	76	18	51	45	0	2	52	1.13
26363--26477	30	3.9	28	75	18	83	48	0	0	49	1.13
26365--26500	63	2.1	63	80	14	147	47	1	2	49	1.23
26358--26500	29	4.8	28	74	17	87	47	1	2	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26732--26793	32	1.9	32	84	15	83	46	1	6	45	1.38
27144--27202	23	2.7	23	79	12	54	45	0	1	52	1.10
27123--27203	15	5.6	14	73	22	62	49	0	1	49	1.08
27144--27177	8	4.4	8	92	7	61	50	0	0	50	1.00
27144--27202	20	2.8	20	82	14	66	45	0	1	52	1.10
27156--27239	26	3.0	27	80	15	75	46	0	3	50	1.19
27313--27793	180	2.7	179	79	4	470	42	9	8	39	1.67
27809--27847	18	2.2	18	86	9	53	51	0	5	43	1.24
28355--28451	11	8.3	11	70	17	61	19	3	2	75	1.04
28357--28451	6	16.0	6	76	8	52	18	3	2	75	1.03
29400--29425	4	6.5	4	100	0	52	46	0	0	53	1.00
29466--29545	17	4.9	15	77	11	70	13	5	1	80	0.95
29458--29545	32	2.6	35	79	15	103	13	6	1	78	1.00
29471--29550	24	3.2	24	77	13	81	13	6	1	78	0.99
29562--29832	58	4.5	58	88	6	357	45	6	13	35	1.68
29804--29863	31	1.9	31	96	3	111	48	1	23	26	1.60
29677--29979	156	2.0	147	87	8	430	44	6	13	35	1.69
29844--30168	57	5.6	57	84	7	431	42	7	12	36	1.71
29833--30168	116	2.9	115	86	7	507	43	7	13	36	1.72
33059--33111	20	2.7	20	97	2	99	37	15	37	9	1.79
38551--38584	8	4.0	9	85	14	54	79	0	8	11	0.94
38553--38587	16	2.3	15	95	5	61	85	0	5	8	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39595--39899	41	7.4	41	92	2	425	23	16	22	37	1.93
39595--39902	81	3.7	82	90	2	429	24	16	22	37	1.94
39595--39822	122	1.9	123	96	0	422	23	16	23	36	1.94
39907--39987	43	1.9	41	87	5	117	24	17	20	37	1.94
40173--40268	5	18.8	5	76	21	76	15	2	2	80	0.91
40180--40271	6	15.2	6	70	22	59	16	2	2	79	0.93
40167--40268	9	10.4	9	72	18	53	14	2	1	80	0.92
40181--40258	28	2.7	29	84	11	97	16	1	2	79	0.91
40375--40440	20	3.2	20	77	16	64	24	1	4	69	1.15
41309--41408	5	19.4	5	74	15	80	18	4	2	76	1.04
41319--41408	17	5.4	16	78	12	85	15	4	2	77	1.02
41319--41408	22	4.0	22	73	21	80	15	4	2	77	1.02
41317--41408	12	7.1	13	69	21	52	16	4	2	77	1.03
41423--41711	67	4.7	59	83	8	373	42	8	15	33	1.77
41509--41711	60	3.4	57	89	6	316	40	9	15	34	1.80
43347--43396	22	2.3	22	96	0	91	48	4	0	48	1.20
43172--43577	203	2.0	203	83	4	507	42	8	6	42	1.60
43630--43662	18	1.9	17	88	11	50	33	6	12	48	1.65
43801--43834	14	2.5	14	90	4	52	41	5	0	52	1.25
43903--43987	19	4.6	18	71	20	68	43	2	1	52	1.21
43893--43989	16	6.1	16	69	20	53	44	2	1	52	1.19
43963--44052	28	3.2	29	75	16	91	50	1	1	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44714--44747	18	1.9	17	88	5	50	44	0	0	55	0.99
44953--44992	15	2.7	15	88	3	55	55	2	0	42	1.13
45027--45082	29	2.0	28	85	3	76	55	1	0	42	1.10
45054--45088	17	2.1	17	88	0	52	60	0	0	40	0.97
45748--45778	15	2.1	14	94	5	53	38	0	0	61	0.96
45774--45822	18	2.8	18	79	14	57	51	0	4	44	1.20
46218--46253	13	2.8	13	91	0	54	36	0	0	63	0.94
46288--46343	18	2.8	19	81	13	60	44	1	5	48	1.36
47254--47304	25	2.0	25	85	7	68	50	0	0	49	1.00
47412--47460	23	2.1	23	100	0	98	46	8	0	44	1.33

Tables:   1   2   3   4   5   6   7   8