genome.fa.s312.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168137.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_38, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  382840

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 864 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339860--339965	4	27.5	4	70	19	50	46	1	2	49	1.27
339936--339989	17	3.2	16	78	17	65	50	3	0	46	1.19
339857--340020	25	6.9	23	67	21	81	46	2	1	48	1.25
339999--340034	17	2.1	17	89	0	54	50	2	0	47	1.15
340187--340563	145	2.6	145	90	2	499	40	11	9	39	1.72
340987--341060	23	3.1	24	73	11	64	50	0	0	50	1.00
340986--341047	31	2.0	30	87	9	90	51	0	0	48	1.00
341028--341062	6	5.7	6	86	6	52	48	0	0	51	1.00
341009--341064	22	2.5	22	79	2	58	51	0	0	48	1.00
341090--341133	20	2.2	20	84	8	54	56	4	2	36	1.32
341160--341218	22	2.7	23	73	19	63	55	3	1	38	1.26
341494--341821	182	1.8	180	85	4	462	39	9	10	40	1.72
341494--341965	182	2.6	181	79	7	460	38	10	9	41	1.72
342061--342320	138	1.9	138	81	9	316	44	9	8	37	1.68
341714--342674	486	2.0	494	81	5	1151	41	9	8	40	1.68
342200--344373	181	12.1	179	75	8	1476	40	10	8	40	1.69
342381--344262	718	2.6	714	77	7	1589	41	10	8	40	1.69
342200--344370	357	6.1	350	73	10	1482	41	10	8	40	1.69
342224--344373	538	4.0	532	77	8	1747	41	10	8	40	1.69
344372--344415	19	2.1	22	88	12	67	54	0	0	45	0.99
344374--344418	18	2.4	20	85	10	60	57	0	0	42	0.98
344392--344437	18	2.5	19	79	10	51	58	0	2	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344734--344783	17	2.8	18	82	11	50	54	4	0	42	1.19
345352--345441	4	21.2	4	69	26	53	50	0	1	48	1.08
345358--345432	16	5.0	16	84	9	88	49	0	1	49	1.09
345369--345470	10	11.1	10	69	25	57	48	0	0	50	1.07
345378--345444	22	3.1	22	79	20	79	52	0	0	47	1.00
345760--345853	35	2.5	39	77	18	110	44	2	0	53	1.12
345985--346026	12	3.4	12	81	12	50	47	0	0	52	1.00
345993--346040	20	2.3	20	85	7	60	43	2	0	54	1.12
346177--346214	17	2.3	16	90	4	58	44	0	0	55	0.99
346198--346244	22	2.1	22	84	0	58	46	2	0	51	1.13
346241--346284	19	2.3	19	88	7	63	47	0	0	52	1.00
346527--346561	18	1.9	18	88	11	54	51	5	0	42	1.25
346531--346568	18	2.1	18	85	9	51	50	5	0	44	1.24
346740--346804	9	8.2	8	73	25	50	44	1	0	53	1.09
346740--346775	17	2.2	17	90	5	56	50	2	0	47	1.15
346751--346823	15	4.5	17	73	21	59	43	0	1	54	1.08
347077--347110	6	5.8	6	89	3	52	47	0	2	50	1.16
347646--347708	26	2.5	23	75	17	54	50	3	0	46	1.17
347970--348273	163	1.9	163	84	2	414	40	5	9	45	1.60
348475--348518	23	2.0	22	95	4	79	45	0	0	54	0.99
348575--348614	16	2.4	17	91	4	64	52	0	2	45	1.14
349638--349698	24	2.5	25	80	17	74	47	1	1	49	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349980--350025	25	1.9	23	83	16	58	56	6	0	36	1.25
350028--350078	23	2.2	24	85	3	68	56	0	0	43	0.99
350139--350171	14	2.3	15	89	5	50	51	0	0	48	1.00
350326--350820	180	2.7	179	75	8	450	41	8	9	40	1.68
351098--351144	18	2.5	19	86	3	60	40	6	0	53	1.27
351260--351284	12	2.1	12	100	0	50	48	0	0	52	1.00
351271--351322	20	2.5	20	76	17	54	51	0	1	46	1.12
351627--351658	14	2.4	14	94	5	57	50	0	0	50	1.00
351885--351964	23	3.5	22	74	16	56	46	1	3	48	1.28
352117--352173	30	2.0	29	83	10	73	43	0	0	56	0.99
353283--353331	25	2.0	24	84	11	64	44	2	2	51	1.24
353301--353341	12	3.5	12	80	12	50	46	0	0	53	1.00
353407--353468	20	3.1	20	77	13	65	45	0	1	53	1.10
353430--353477	20	2.3	22	86	10	66	41	2	2	54	1.24
353648--353687	20	2.0	20	85	4	55	42	12	10	35	1.76
353873--353915	20	2.2	19	88	12	61	46	0	0	53	1.00
354362--354396	10	3.4	10	84	7	52	57	2	0	40	1.14
354360--354428	28	2.5	26	72	22	70	52	1	1	44	1.19
354589--354654	34	1.9	34	84	6	89	50	1	1	46	1.20
354603--354650	15	3.3	13	81	18	51	50	2	2	45	1.25
354748--354782	18	1.9	18	88	0	52	54	0	0	45	0.99
354740--354817	34	2.3	33	79	14	88	47	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354843--354890	16	3.2	16	72	25	50	45	0	0	54	0.99
354905--354994	29	3.3	25	75	25	85	48	2	1	47	1.21
354951--354991	18	2.4	18	80	8	50	48	2	2	46	1.28
355102--355191	45	2.0	47	82	8	114	50	5	0	44	1.25
355294--355349	23	2.4	23	81	3	67	44	5	0	50	1.25
355311--355356	23	2.0	23	91	0	74	43	0	2	54	1.12
355383--355422	20	2.0	20	85	0	53	52	7	0	40	1.30
355557--355611	24	2.2	24	84	15	69	47	0	1	50	1.11
355557--355622	12	5.6	12	73	21	59	50	0	1	48	1.10
355548--355621	22	3.3	22	77	20	73	47	0	1	51	1.09
357093--357133	20	2.1	19	86	4	55	48	4	0	46	1.23
357127--357178	21	2.8	17	71	20	50	46	1	3	48	1.31
357160--357198	20	2.0	19	85	5	51	41	0	0	58	0.98
357410--357473	20	3.1	21	80	11	69	48	0	1	50	1.10
357414--357494	25	3.2	26	80	16	89	48	0	3	48	1.19
357769--358041	145	1.9	145	83	4	354	44	11	8	35	1.70
358803--358837	13	2.8	13	87	12	56	45	0	5	48	1.26
359353--359972	179	3.4	176	82	7	664	40	9	8	41	1.67
360006--360074	29	2.4	28	76	11	68	50	2	2	43	1.32
360369--360399	16	1.9	16	93	0	53	48	0	3	48	1.17
360853--360892	20	2.0	20	85	4	55	50	0	0	50	1.00
361181--361227	21	2.3	20	88	3	67	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361702--361751	26	1.9	27	88	8	77	58	4	2	36	1.29
362094--362136	17	2.7	15	85	10	50	44	2	0	53	1.13
363825--363885	21	2.9	20	74	11	59	55	8	1	34	1.39
363940--363974	18	1.9	18	100	0	70	28	5	5	60	1.43
364858--364894	18	2.0	19	89	5	58	43	8	13	35	1.74
364609--365865	528	2.4	535	76	7	1160	40	7	9	42	1.66
364609--365832	181	6.9	181	76	7	702	40	7	9	41	1.66
366132--366236	50	2.0	54	82	14	130	50	1	1	45	1.23
366877--366906	15	1.9	16	93	6	53	46	0	0	53	1.00
367112--367166	21	2.8	19	82	15	67	43	0	3	52	1.18
367112--367157	21	2.2	21	88	11	69	47	0	2	50	1.13
367241--367271	16	2.0	16	93	6	55	41	0	0	58	0.98
367294--367345	23	2.2	24	80	16	65	48	1	0	50	1.12
367346--367402	18	3.4	17	79	15	57	56	0	0	43	0.99
367418--367507	15	5.9	15	70	17	60	50	3	1	45	1.25
367431--367497	23	3.0	23	73	18	68	52	1	1	44	1.19
367724--367796	16	4.4	16	71	20	60	42	1	2	53	1.23
367725--367800	22	3.3	22	74	22	57	43	1	2	52	1.23
367726--367786	18	3.6	16	73	18	52	42	1	1	54	1.20
367974--367998	13	1.9	13	100	0	50	56	4	0	40	1.18
369185--369241	15	3.5	15	75	15	51	49	1	0	49	1.11
369174--369236	25	2.4	27	84	12	78	49	1	0	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369209--369259	16	2.8	18	74	17	52	49	0	3	47	1.20
369290--369332	10	4.4	10	77	16	54	58	0	2	39	1.11
369290--369332	19	2.2	20	84	12	54	58	0	2	39	1.11
369457--369524	26	2.8	25	73	20	63	51	0	0	48	1.00
369602--369639	17	2.1	19	85	9	53	55	0	2	42	1.14
369693--370679	180	5.5	180	75	8	800	41	9	9	39	1.70
369714--370625	361	2.5	362	77	8	821	42	9	8	39	1.69
370922--370968	21	2.2	22	88	3	69	38	4	2	55	1.31
370974--371008	18	1.9	18	100	0	70	51	0	0	48	1.00
370961--371014	10	5.6	10	73	8	58	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8