genome.fa.s312.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168137.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_38, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  382840

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 864 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126030--126082	17	2.8	20	77	16	67	50	0	1	47	1.12
126029--126098	20	3.7	20	75	9	65	50	0	2	47	1.16
126202--126256	21	2.8	19	77	20	60	45	1	5	47	1.36
126318--126362	17	2.7	18	83	10	60	44	4	0	51	1.21
126354--126406	21	2.5	21	87	3	70	45	1	5	47	1.37
126392--126449	10	6.0	10	76	15	68	51	1	0	46	1.11
126389--126453	19	3.6	18	79	20	73	52	1	0	46	1.10
126338--126452	28	3.9	29	76	12	94	48	2	2	46	1.30
126446--126491	17	2.7	18	83	10	60	45	0	0	54	0.99
126439--126490	22	2.2	25	83	10	74	44	0	0	55	0.99
126901--126944	8	5.5	8	81	8	54	43	0	0	56	0.99
127240--127297	19	2.8	20	79	10	64	56	3	0	39	1.16
127241--127305	16	3.8	18	75	17	68	55	3	0	41	1.15
127893--128460	178	3.2	176	80	6	610	44	10	6	39	1.65
128725--128812	20	4.5	20	80	8	74	27	2	4	65	1.23
128746--128812	20	3.4	20	83	2	82	29	1	4	64	1.22
128775--128866	48	1.9	48	89	8	143	35	5	1	57	1.29
128775--128910	24	5.9	24	73	16	110	34	4	2	58	1.33
128854--128910	15	3.9	14	77	11	51	31	3	5	59	1.36
128785--128902	62	1.9	61	82	5	148	34	4	3	57	1.35
129651--129700	22	2.3	22	86	3	66	30	2	2	66	1.14
129715--129748	11	3.1	11	88	12	52	17	5	0	76	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129717--129751	5	6.6	5	87	12	52	17	2	0	80	0.84
129712--129753	17	2.4	18	84	11	61	16	4	0	78	0.91
129969--130007	14	2.7	14	80	4	51	56	0	5	38	1.22
129888--130211	59	5.6	59	79	7	326	45	6	10	37	1.64
130020--130053	17	2.0	17	94	0	59	47	2	0	50	1.16
129875--130204	116	2.8	116	81	6	368	45	6	11	37	1.66
130136--130168	15	2.1	16	88	5	50	57	9	0	33	1.30
129880--130258	116	3.3	111	76	11	343	44	7	11	36	1.68
133465--133495	15	2.1	15	93	0	53	19	22	6	51	1.69
140732--140787	21	2.5	23	85	8	71	78	0	14	7	0.95
141783--141906	42	3.0	41	75	14	128	27	16	20	35	1.94
142192--142246	21	2.7	21	82	2	76	32	1	1	63	1.15
142191--142343	24	6.6	24	71	16	110	33	3	3	58	1.32
142285--142349	14	4.6	14	75	11	51	32	3	4	60	1.33
143064--143105	12	3.3	13	80	12	52	33	2	0	64	1.07
143123--143161	5	7.4	5	88	11	60	17	2	0	79	0.84
143198--143228	16	1.9	16	93	0	53	54	0	6	38	1.26
143216--143452	57	4.1	59	76	10	222	45	6	10	36	1.65
143313--143342	13	2.3	13	94	0	51	50	0	0	50	1.00
143199--143495	116	2.5	117	82	6	332	45	6	11	36	1.66
144071--144123	21	2.5	21	81	3	61	41	1	1	54	1.22
144251--144315	7	8.9	7	71	15	51	58	1	1	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144357--144411	23	2.3	24	80	20	62	47	0	0	52	1.00
144685--144719	15	2.2	16	90	5	54	54	2	0	42	1.15
145180--145238	22	2.6	22	84	10	66	50	1	1	45	1.21
145406--145452	11	4.2	11	77	22	53	44	2	0	53	1.12
145406--145457	17	3.1	16	74	17	52	42	1	1	53	1.23
145473--146683	181	6.8	177	74	10	887	41	7	9	41	1.65
145474--146683	356	3.4	352	77	7	968	41	7	9	41	1.65
146956--147004	16	3.1	15	77	11	53	55	2	0	42	1.11
146932--147012	24	3.5	24	68	22	66	54	2	1	41	1.21
147142--147192	25	2.2	25	86	10	72	39	1	5	52	1.37
147127--147192	25	2.6	24	77	20	71	39	1	4	54	1.30
147696--147753	29	2.0	29	83	9	75	51	0	1	46	1.11
147710--147753	14	3.1	14	81	12	54	45	0	2	52	1.13
148213--148244	17	2.0	17	88	11	50	43	0	6	50	1.27
148212--148254	14	2.9	15	80	13	54	46	0	4	48	1.22
151626--152113	180	2.7	177	78	8	464	38	8	9	43	1.67
152377--152455	23	3.5	22	77	16	72	50	1	1	46	1.17
152377--152436	25	2.6	23	82	10	68	53	1	0	45	1.10
152600--152646	23	2.0	23	83	0	58	51	0	0	48	1.00
153132--153164	13	2.6	13	95	4	59	45	0	0	54	0.99
153306--153334	14	2.1	14	100	0	58	65	0	0	34	0.93
153344--153385	15	2.8	15	88	0	57	42	0	4	52	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153452--153492	20	2.0	20	90	9	66	36	0	7	56	1.27
153778--153816	9	4.0	9	87	12	51	46	0	0	53	1.00
153796--153833	14	2.4	16	87	12	53	52	0	0	47	1.00
153758--153836	17	4.5	18	72	24	62	53	0	0	46	1.00
154108--154621	177	2.9	179	78	7	549	39	7	9	43	1.65
155213--155256	15	2.8	16	80	19	56	56	0	4	38	1.20
155211--155259	23	2.2	22	82	10	55	55	0	4	40	1.19
155480--155547	26	2.7	24	75	9	64	44	8	1	45	1.44
155661--155721	12	4.9	12	73	13	52	47	0	1	50	1.10
155686--155777	39	2.5	36	78	15	98	46	1	2	50	1.20
155919--155961	22	2.0	22	86	9	61	53	6	0	39	1.28
157005--157089	41	2.1	41	93	0	143	38	21	20	20	1.93
163717--163829	52	2.1	54	80	13	121	46	0	1	51	1.11
163778--163834	26	2.2	26	81	15	73	49	0	0	50	1.00
163783--163861	33	2.4	33	82	14	92	46	1	0	51	1.08
164061--164104	18	2.5	18	79	17	56	45	0	2	52	1.13
164784--164838	25	2.2	24	78	15	58	47	1	1	49	1.23
166049--166093	23	1.9	24	81	4	56	48	4	0	46	1.22
166078--166460	181	2.1	177	82	5	459	42	10	8	38	1.69
166532--166563	17	2.0	17	88	11	50	43	0	6	50	1.27
166563--166614	26	2.0	27	88	3	79	44	3	3	48	1.39
166820--167392	176	3.2	173	76	7	447	42	8	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168071--168136	25	2.7	23	77	13	69	48	0	0	51	1.00
168681--168710	15	2.0	15	93	0	51	43	13	3	40	1.60
169043--169075	18	1.9	17	88	11	50	48	3	6	42	1.43
177716--177770	22	2.5	22	96	0	101	47	9	10	32	1.70
178754--178789	18	1.9	19	94	5	65	38	0	0	61	0.96
178745--178786	22	1.9	22	85	0	57	40	2	0	57	1.12
179165--179230	28	2.4	27	78	12	71	48	0	1	50	1.10
179162--179230	14	5.0	14	74	10	54	50	0	1	47	1.09
179193--179235	20	2.0	22	91	8	72	46	0	0	53	1.00
179338--179367	11	2.7	11	94	0	51	46	3	6	43	1.46
179487--179533	23	2.0	23	83	0	58	51	0	0	48	1.00
179551--179594	18	2.4	17	85	11	52	45	4	0	50	1.22
179694--179776	10	8.1	10	69	24	57	56	1	1	40	1.15
179720--179769	24	2.1	24	89	10	77	58	0	2	40	1.10
179744--179777	18	1.9	17	94	5	59	58	0	0	41	0.98
179716--179885	27	6.3	27	67	21	72	46	1	1	50	1.19
179802--179893	27	3.2	27	70	7	76	39	1	1	58	1.12
181362--181406	23	1.9	24	81	4	56	51	2	0	46	1.13
181620--181653	17	1.9	18	88	5	52	55	0	5	38	1.24
181919--181972	22	2.4	22	75	9	56	53	3	1	40	1.29
181997--182120	12	10.2	12	68	17	51	50	0	1	47	1.16
182031--182087	27	2.1	27	83	6	71	52	1	1	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182164--182225	23	2.5	24	82	12	74	53	0	1	45	1.10
182233--182309	26	3.0	25	72	14	68	44	0	7	48	1.32
182429--182542	28	4.3	25	77	18	81	45	0	0	52	1.12
182477--182629	9	17.6	9	72	21	89	45	1	0	52	1.13
182418--182588	38	4.5	37	73	20	108	46	0	1	52	1.12
182497--182577	33	2.5	32	80	13	85	45	0	1	53	1.08
182477--182579	35	3.0	33	77	16	95	46	0	0	52	1.07
182491--182619	26	4.9	24	72	21	82	45	1	0	51	1.15
182766--182808	13	3.6	12	85	14	54	48	2	0	48	1.14
184324--184411	17	5.1	18	69	19	55	40	1	1	56	1.14

Tables:   1   2   3   4   5   6   7   8