genome.fa.s312.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168137.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_38, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  382840

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 864 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88479--88928	242	1.8	247	81	6	558	42	10	6	40	1.66
90037--90096	30	2.0	31	83	9	79	46	3	1	48	1.28
90526--90572	16	2.6	18	80	16	53	51	2	2	44	1.25
90525--90581	22	2.4	24	80	8	64	50	1	1	45	1.22
90699--90768	20	3.4	19	84	11	86	47	5	0	47	1.26
90713--90773	19	3.0	20	83	11	79	50	4	0	44	1.23
90906--90997	15	5.9	15	74	18	80	54	0	2	43	1.12
90909--90983	12	6.6	12	70	20	54	54	0	1	44	1.08
90909--90982	22	3.3	22	74	23	73	55	0	1	43	1.08
90906--90997	33	2.9	31	82	8	96	54	0	2	43	1.12
92772--92827	25	2.2	25	84	12	71	42	3	0	53	1.18
93152--93176	13	1.9	13	100	0	50	60	0	0	40	0.97
93498--93539	14	2.6	17	75	21	54	47	0	0	52	1.00
93472--93614	50	2.9	47	77	14	139	50	2	0	46	1.16
93489--93612	24	5.2	24	73	23	95	51	1	0	46	1.10
93486--93712	20	11.9	20	68	22	82	51	1	0	45	1.17
93715--93766	17	2.9	18	76	23	56	50	5	1	42	1.37
93754--93811	23	2.5	24	86	8	77	51	3	0	44	1.18
94613--94657	13	3.4	13	84	6	54	42	0	2	55	1.12
94560--94670	50	2.2	49	78	10	118	47	0	2	49	1.15
95173--95212	16	2.5	17	76	23	50	52	5	10	32	1.56
95799--95844	21	2.1	22	84	4	58	36	2	2	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96416--97694	177	7.2	178	73	8	702	40	10	8	39	1.71
98063--98115	19	2.7	19	75	16	54	50	1	0	47	1.12
98215--98248	16	2.1	16	89	10	52	41	0	0	58	0.98
98250--98301	16	3.2	16	76	15	52	50	0	0	50	1.00
98259--98301	17	2.6	16	85	3	59	53	0	0	46	1.00
98521--98827	171	1.8	170	80	7	381	38	8	9	43	1.68
98692--99573	181	4.9	179	79	5	789	42	9	8	39	1.67
98692--99561	360	2.4	360	79	5	891	42	9	8	39	1.68
99826--99881	12	5.0	11	77	14	53	37	1	1	58	1.19
99841--99885	21	2.1	22	91	4	74	42	0	0	57	0.98
99938--99977	13	2.9	14	81	7	55	50	0	0	50	1.00
100109--100171	25	2.5	25	76	14	67	49	0	1	49	1.10
100398--100463	26	2.5	26	79	11	82	46	1	1	50	1.20
100506--100545	22	1.9	20	90	10	62	52	0	0	47	1.00
100507--100557	22	2.4	21	84	12	61	54	0	0	45	0.99
100956--100998	13	3.1	14	83	6	52	51	0	0	48	1.00
101144--101183	17	2.4	17	87	8	55	55	2	0	42	1.13
101817--101871	20	2.8	19	77	20	60	56	0	1	41	1.10
101825--101897	28	2.6	28	82	8	78	49	1	2	46	1.24
102110--102190	24	3.4	25	73	19	66	38	1	6	54	1.33
102357--102407	25	2.0	25	85	7	68	49	0	0	50	1.00
102745--102831	45	2.0	43	81	4	102	48	16	11	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103180--103212	16	1.9	18	88	11	52	42	3	3	51	1.32
103360--103384	13	1.9	13	100	0	50	40	8	0	52	1.31
103863--103901	12	3.3	11	83	16	51	58	0	0	41	0.98
103871--103901	15	2.1	14	94	5	53	61	0	0	38	0.96
104163--104208	14	3.2	14	84	6	56	39	0	4	56	1.19
104553--104602	22	2.3	21	83	13	57	40	0	2	58	1.10
104919--104952	18	1.9	17	88	5	50	55	0	0	44	0.99
104966--105015	18	2.7	18	82	11	57	52	0	0	48	1.00
105499--105538	19	2.1	19	86	9	55	45	0	2	52	1.14
105678--105728	18	2.8	18	77	11	59	47	0	0	52	1.00
105673--105773	15	6.7	15	68	13	55	44	0	0	53	1.13
105733--105810	28	2.8	28	83	11	81	47	2	1	48	1.23
105783--105849	28	2.4	27	77	15	73	47	1	2	47	1.26
105873--105906	14	2.5	13	90	4	50	52	0	5	41	1.25
105963--106713	182	4.2	179	78	6	720	40	7	10	41	1.67
106435--106489	24	2.3	25	75	12	62	38	1	3	56	1.28
105975--106713	359	2.1	353	81	5	851	40	7	10	41	1.67
106770--106807	20	1.9	20	89	10	60	52	5	5	36	1.47
107660--107707	16	2.9	16	81	12	62	45	0	2	52	1.12
107657--107730	18	4.3	18	73	20	61	52	0	1	45	1.09
107641--107751	53	2.1	52	83	1	132	50	1	3	44	1.30
107646--107771	11	11.5	11	66	13	53	52	0	3	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107798--107828	16	2.0	15	93	6	53	64	0	0	35	0.94
108990--109029	21	1.9	21	85	10	55	55	2	2	40	1.27
109940--109999	28	2.1	29	78	9	70	53	3	0	43	1.17
109940--110010	23	3.1	23	81	4	81	52	2	0	45	1.15
110181--110227	20	2.5	19	86	10	69	44	2	0	53	1.12
110174--110230	20	2.8	20	79	12	62	43	3	0	52	1.18
110340--110386	18	2.4	20	79	10	53	46	0	2	51	1.13
110439--110480	15	2.9	14	83	13	50	52	2	2	42	1.27
110651--110691	21	2.0	21	85	9	57	51	0	2	46	1.14
110656--110712	13	4.5	13	74	22	50	49	0	1	49	1.11
110600--110745	19	7.7	18	66	24	70	49	1	3	45	1.27
110865--110930	30	2.1	33	83	13	86	50	1	1	46	1.20
110893--110946	28	1.9	28	85	7	74	46	1	1	50	1.23
111430--111529	22	4.7	21	76	19	84	51	3	0	46	1.16
111502--111541	19	2.0	20	90	4	64	52	2	0	45	1.14
111832--111935	16	6.2	16	72	18	79	50	1	1	45	1.23
111910--111956	9	5.6	9	85	14	57	48	0	0	51	1.00
113211--113243	17	1.9	17	88	11	50	45	0	0	54	0.99
113772--113844	14	5.4	14	73	16	55	54	5	1	38	1.32
113903--113939	18	2.0	19	94	5	67	56	0	5	37	1.22
114799--114841	19	2.3	19	87	0	59	44	0	2	53	1.13
115304--115336	12	2.6	13	90	4	50	33	6	3	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115392--115449	29	2.0	30	90	10	93	50	0	0	50	1.00
115742--116502	177	4.3	177	78	5	701	40	9	8	40	1.69
118032--118145	22	5.3	22	69	24	66	46	1	1	50	1.22
118032--118085	28	1.9	28	85	7	74	53	1	0	44	1.11
118112--118166	22	2.5	22	82	8	60	45	3	0	50	1.19
118258--118310	18	3.0	18	83	8	65	47	0	1	50	1.12
118860--118889	15	2.0	15	100	0	60	46	0	0	53	1.00
118926--118973	18	2.5	19	78	18	55	52	2	4	41	1.32
119201--119240	19	2.1	19	86	9	55	52	0	0	47	1.00
119225--119292	28	2.7	25	86	13	88	41	0	4	54	1.20
119937--119992	27	2.1	27	83	6	69	35	0	5	58	1.21
121235--121292	21	2.7	21	84	7	64	53	0	1	44	1.10
121206--121292	27	3.3	27	79	7	81	50	1	3	44	1.26
121233--121317	31	2.8	31	78	8	77	54	2	3	40	1.31
122548--122585	18	2.1	18	90	9	60	44	0	0	55	0.99
122492--122583	41	2.2	41	77	7	98	44	2	0	53	1.12
122793--122880	26	3.3	25	71	22	65	45	2	0	52	1.13
123163--123253	22	4.0	22	67	13	60	50	3	1	45	1.25
123278--123341	29	2.4	26	84	10	76	56	1	0	42	1.09
123245--123366	11	11.1	11	70	16	67	50	2	0	45	1.20
123241--123365	51	2.5	49	78	15	125	51	2	0	45	1.20
123879--124217	182	1.9	181	80	5	398	38	7	9	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124619--124733	30	3.9	28	75	18	83	48	0	0	49	1.13
124643--124756	31	3.7	32	76	18	93	48	1	0	49	1.17
124621--124756	63	2.1	63	80	14	147	48	1	0	49	1.15
125295--125325	16	2.0	15	93	6	53	48	0	0	51	1.00
125363--125398	17	2.1	17	89	0	54	52	0	0	47	1.00
125370--125457	25	3.7	25	68	25	64	48	1	1	48	1.16
125431--125495	35	1.9	35	84	12	91	43	3	0	53	1.16
125433--125509	35	2.3	33	78	12	86	45	2	0	51	1.14
125739--125792	16	3.2	16	76	21	56	61	0	1	37	1.07
125739--125795	19	3.2	18	81	18	66	61	0	1	36	1.07

Tables:   1   2   3   4   5   6   7   8