genome.fa.s312.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168137.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_38, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  382840

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 864 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287482--287531	15	3.3	15	74	23	50	42	2	0	56	1.11
287777--287815	21	1.9	20	84	5	51	51	0	0	48	1.00
288815--288855	16	2.5	17	80	11	50	41	2	2	53	1.27
288883--288942	27	2.3	26	81	13	70	55	1	1	41	1.20
288938--288980	15	3.1	15	80	16	56	51	0	0	48	1.00
288928--288984	20	2.8	20	76	23	66	49	0	0	50	1.00
288941--289026	20	4.0	21	69	19	61	48	1	1	48	1.16
290114--290159	8	5.9	8	78	14	51	50	2	0	47	1.13
290243--290301	21	2.8	21	79	5	66	49	0	5	45	1.24
290264--290325	24	2.5	24	84	5	70	48	0	6	45	1.28
291665--291719	23	2.5	22	85	8	76	50	0	0	49	1.00
291698--291738	19	2.2	19	91	4	66	43	0	2	53	1.13
291864--291910	23	2.0	23	83	0	58	51	0	0	48	1.00
292191--292215	10	2.5	10	100	0	50	32	8	0	60	1.26
292363--292442	32	2.5	32	81	15	87	50	1	1	47	1.17
295825--296082	138	1.9	137	83	5	342	43	9	8	37	1.68
296386--296418	15	2.2	15	89	10	50	57	0	6	36	1.23
295962--296553	180	3.3	178	81	4	645	39	10	8	41	1.70
296284--296843	299	1.9	303	83	4	749	38	10	8	42	1.70
296550--296873	175	1.8	176	84	2	436	40	9	6	42	1.65
296598--297234	182	3.6	179	75	6	578	42	9	7	40	1.66
297245--298046	181	4.6	169	73	14	454	40	10	7	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296104--297832	647	2.6	650	77	8	1738	39	10	8	41	1.69
297347--298370	181	5.7	179	76	7	774	40	9	8	40	1.69
298391--298425	12	3.0	12	95	4	63	48	0	0	51	1.00
298440--298505	29	2.4	27	75	20	64	46	1	0	51	1.10
298874--298914	20	2.0	20	85	4	55	46	0	4	48	1.23
298875--298939	21	3.2	20	80	8	76	46	1	3	49	1.27
298957--299002	23	2.0	22	87	4	65	39	2	2	56	1.24
298988--299026	20	2.1	18	85	9	51	41	0	0	58	0.98
299097--299151	27	2.2	25	78	12	60	52	1	0	45	1.11
301363--301431	25	2.8	26	79	20	85	57	0	0	42	0.98
301336--301440	12	9.0	12	72	20	80	56	0	0	42	1.06
301433--301504	23	3.1	22	74	21	60	45	2	2	48	1.31
301675--301724	18	2.8	17	83	16	66	40	2	2	56	1.22
301975--302001	6	4.5	6	100	0	54	48	0	0	51	1.00
302302--302347	21	2.1	22	84	4	58	36	2	2	58	1.22
302702--302744	22	2.0	22	86	9	61	55	0	0	44	0.99
303078--303155	29	2.6	30	77	20	83	47	2	0	50	1.15
303164--303216	17	3.1	17	82	12	65	52	1	0	45	1.11
303245--303294	21	2.4	21	81	18	61	48	0	2	50	1.12
303300--303354	19	3.0	18	84	10	67	56	1	5	36	1.33
303909--304230	177	1.8	177	83	2	432	41	9	7	41	1.65
305609--306219	332	1.8	333	88	3	937	28	26	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306405--306656	138	1.8	137	83	4	337	43	9	8	38	1.68
306543--307132	180	3.3	179	82	7	669	40	10	7	41	1.68
307127--308657	182	8.6	181	74	8	928	41	10	7	39	1.68
307167--308621	537	2.7	534	81	4	1540	42	9	7	39	1.68
308689--308719	11	2.8	11	95	0	53	58	0	0	41	0.98
308672--308726	29	1.9	28	85	10	76	56	0	0	43	0.99
308683--308739	11	4.9	12	81	16	50	59	0	1	38	1.08
308696--308745	18	2.7	19	81	9	59	60	0	2	38	1.09
309066--309109	19	2.4	18	82	14	54	54	2	0	43	1.12
309383--309424	16	2.6	16	82	14	50	50	0	2	47	1.14
309504--309564	20	3.0	20	72	11	52	59	0	3	37	1.14
309530--309567	18	2.1	18	85	9	51	57	0	0	42	0.98
309515--309577	33	1.9	33	87	6	92	57	0	1	41	1.08
309555--309732	25	7.1	24	64	21	71	45	0	3	50	1.22
309645--309705	16	4.3	15	76	23	62	50	0	0	49	1.00
309627--309702	35	2.2	35	81	9	95	50	1	0	48	1.09
309674--309733	16	3.8	16	80	20	72	48	0	1	50	1.11
310389--310490	38	2.7	36	71	18	91	53	2	0	42	1.22
310787--310841	18	3.2	16	80	15	58	41	1	1	54	1.21
312591--312636	17	2.7	17	80	16	51	43	0	2	54	1.12
312746--313016	145	1.9	145	88	4	413	42	9	7	40	1.65
312881--314305	176	8.0	177	72	11	783	40	9	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314302--314337	18	2.0	18	88	0	54	55	0	0	44	0.99
314373--314432	30	2.0	31	83	9	79	48	1	1	48	1.21
315522--315571	21	2.4	21	80	9	59	18	30	24	28	1.97
316488--316569	40	2.0	40	95	0	146	31	31	8	28	1.87
322695--322755	18	3.5	17	77	22	63	47	0	1	50	1.10
322701--322766	12	5.4	13	77	15	61	46	1	1	50	1.20
322714--322757	22	1.9	24	90	9	74	50	0	0	50	1.00
322703--322758	17	3.2	18	82	14	64	50	0	1	48	1.11
322709--322763	22	2.5	22	82	8	69	49	1	0	49	1.11
322842--322956	42	2.7	42	81	14	119	50	4	0	44	1.27
322902--322957	16	3.7	16	75	18	57	55	3	0	41	1.17
323024--323062	18	2.1	19	95	4	71	53	0	2	43	1.14
323115--323155	17	2.4	18	88	8	59	51	4	0	43	1.23
323318--323359	22	1.9	22	90	9	68	42	4	2	50	1.36
323375--323472	26	3.6	25	71	23	74	47	1	4	46	1.28
323416--323463	22	2.1	23	81	11	55	45	0	2	52	1.12
323431--323508	26	2.9	26	75	18	79	42	0	1	56	1.07
323437--323497	15	3.9	16	75	16	58	42	0	0	57	0.98
323795--323910	35	3.4	35	75	17	100	45	0	2	50	1.21
323876--323942	15	4.2	16	74	20	52	50	1	2	44	1.26
324391--325048	176	3.7	177	79	6	585	41	10	7	39	1.69
324391--325048	352	1.8	355	79	5	754	41	10	7	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324391--325092	356	2.0	355	78	5	745	42	10	7	39	1.69
325220--325275	26	2.2	27	87	9	82	46	5	0	48	1.25
325307--325337	16	1.9	16	100	0	62	32	0	9	58	1.31
325306--325342	16	2.5	14	84	16	56	37	0	8	54	1.30
325618--325667	21	2.2	24	86	10	70	60	0	0	40	0.97
326045--326082	17	2.2	17	86	9	51	42	0	2	55	1.14
326648--326711	28	2.5	24	80	12	74	53	1	0	45	1.10
326644--326703	28	2.1	28	84	6	77	56	1	0	41	1.09
327278--327306	9	3.3	9	95	4	51	58	0	0	41	0.98
327825--327958	32	4.4	29	78	14	103	47	0	1	51	1.10
328249--328287	6	6.7	6	82	5	53	46	2	2	48	1.29
328248--328287	17	2.3	17	86	4	53	45	2	2	50	1.28
329452--329495	13	3.2	13	83	6	52	47	0	6	45	1.29
329616--329660	13	3.5	13	78	3	56	53	2	0	44	1.13
329630--329776	40	3.7	39	72	18	92	45	1	1	51	1.18
329803--329860	21	2.7	21	84	7	64	53	0	1	44	1.10
329799--329860	27	2.3	27	82	2	79	54	0	1	43	1.09
329801--329885	31	2.8	31	78	8	77	54	2	3	40	1.31
330070--330126	22	2.6	22	78	10	64	49	1	1	47	1.22
330070--330127	14	4.1	14	78	14	57	50	1	1	46	1.22
330650--330692	18	2.3	19	80	8	52	39	2	2	55	1.25
330824--330892	32	2.3	29	76	13	70	42	1	2	53	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331022--331057	16	2.2	17	90	5	56	47	5	0	47	1.25
331044--331099	28	2.0	27	83	13	69	41	3	0	55	1.17
331075--331112	18	2.1	18	85	9	51	44	2	0	52	1.14
331476--331540	25	2.6	24	77	18	69	50	3	1	44	1.26
331770--331831	27	2.3	27	78	10	74	46	3	1	48	1.28
332658--332723	22	2.8	24	80	15	66	42	1	1	54	1.18
332663--332734	18	4.2	18	72	24	57	44	1	1	52	1.18
333562--333615	15	3.6	15	100	0	108	33	20	5	40	1.76
339609--339692	28	2.8	30	77	22	81	51	1	1	46	1.16
339855--339981	7	17.0	7	70	22	64	45	1	2	50	1.24

Tables:   1   2   3   4   5   6   7   8