genome.fa.s312.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168137.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_38, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  382840

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 864 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48333--48377	24	2.0	22	83	16	56	57	2	2	37	1.23
48628--48701	33	2.3	32	83	6	87	48	4	0	47	1.20
48640--48702	32	1.9	33	87	3	92	47	3	0	49	1.17
48723--48774	15	3.7	15	80	14	67	46	0	0	53	1.00
48747--48787	13	3.0	14	86	10	50	46	2	0	51	1.14
48819--48900	17	4.5	17	74	18	58	47	3	0	48	1.19
49237--49287	22	2.4	22	81	15	63	45	0	0	54	0.99
49310--49390	21	3.5	22	73	23	69	48	1	2	48	1.23
49568--49661	13	7.4	13	71	21	65	47	0	1	51	1.07
49571--49661	20	4.9	17	74	20	67	48	0	1	50	1.08
49568--49667	51	2.0	51	84	11	134	49	0	1	50	1.07
50106--50173	28	2.5	27	76	9	75	44	0	1	54	1.09
50633--50705	16	4.6	17	69	19	52	53	2	0	43	1.15
50643--50701	29	2.0	31	80	12	70	55	3	0	40	1.16
51779--51888	19	5.6	20	72	21	83	49	0	0	49	1.13
51772--51818	12	3.8	12	83	13	51	46	0	0	53	1.00
51787--51921	58	2.3	59	76	10	134	48	0	2	48	1.19
52014--52068	20	2.8	20	83	5	67	43	0	0	56	0.99
52028--52069	13	3.0	14	86	6	50	45	0	0	54	0.99
52049--52199	27	5.9	26	71	20	97	49	0	0	49	1.10
52017--52189	93	1.8	97	79	12	207	47	0	0	51	1.09
52859--52902	19	2.3	18	82	17	54	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52847--52902	25	2.2	24	84	12	69	44	3	0	51	1.18
52844--52903	23	2.7	22	83	16	72	45	3	0	51	1.17
52912--52948	12	3.2	12	88	7	58	54	0	0	45	1.00
52918--52951	17	2.1	16	88	5	50	52	0	0	47	1.00
52913--52977	25	2.6	25	81	11	73	53	1	1	43	1.19
53496--53605	8	14.1	8	70	17	72	50	0	0	49	1.07
53492--53585	22	4.5	22	76	21	94	48	1	0	50	1.07
53471--53573	17	6.7	15	67	23	54	48	0	0	49	1.14
53505--53604	40	2.5	39	80	9	105	51	1	0	48	1.07
54148--54191	7	6.9	7	78	17	51	40	2	0	56	1.11
54159--54316	19	8.3	19	64	24	66	46	1	0	51	1.16
54159--54243	6	14.7	6	70	19	56	44	0	1	54	1.07
55280--55856	180	3.2	178	75	6	552	37	7	11	43	1.68
55957--55997	21	1.9	22	90	5	66	46	0	2	51	1.14
56023--56080	25	2.3	26	79	11	66	48	3	1	46	1.29
56353--56393	20	2.1	19	90	4	64	46	0	2	51	1.14
56492--56545	13	4.0	13	79	13	56	57	1	7	33	1.37
60779--60811	18	1.9	17	88	11	50	42	6	3	48	1.43
61148--61177	15	2.0	15	93	0	51	40	3	13	43	1.60
61336--61388	16	3.2	16	79	10	54	50	0	3	45	1.19
61387--61432	23	2.0	24	83	12	60	47	2	2	47	1.26
62150--62193	18	2.2	20	80	15	56	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62151--62202	18	2.8	18	80	11	52	51	0	1	46	1.12
62468--62877	180	2.3	178	75	10	402	39	9	8	42	1.69
62557--63159	177	3.4	177	75	8	443	39	7	10	41	1.69
63378--63776	181	2.2	176	81	6	437	38	7	10	43	1.67
63860--63897	20	2.0	20	89	5	60	55	0	7	36	1.29
64816--64857	20	2.2	20	91	4	68	35	0	4	59	1.19
64817--64862	20	2.2	20	88	3	65	36	0	4	58	1.18
64943--65044	34	3.1	33	68	16	86	47	2	2	47	1.32
65063--65129	25	2.7	25	80	15	68	50	1	1	46	1.19
65113--65179	24	2.9	24	73	10	68	44	0	1	53	1.09
65116--65180	5	12.8	5	73	14	53	44	0	1	53	1.09
66573--66658	36	2.4	36	94	5	147	44	9	15	31	1.78
66866--66911	15	2.9	16	75	15	51	50	0	0	50	1.00
67011--67064	16	3.5	16	76	14	60	48	0	0	51	1.00
67012--67061	25	2.0	25	84	7	66	46	0	0	54	1.00
67037--67155	45	2.6	45	80	12	120	48	0	0	49	1.12
67094--67154	25	2.6	23	78	17	63	52	1	0	45	1.10
67114--67167	26	2.0	27	82	10	67	51	3	1	42	1.30
67434--67839	182	2.2	180	81	5	462	38	8	9	43	1.68
67863--69328	181	8.4	175	73	12	730	39	7	9	42	1.66
67863--68481	174	3.5	172	80	7	547	40	6	9	43	1.63
69027--69328	163	1.9	161	81	4	376	40	9	8	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69576--70107	181	2.9	180	77	6	448	42	7	7	41	1.62
69560--70172	180	3.4	178	76	8	555	41	7	8	42	1.63
70512--70550	15	2.7	14	84	4	51	51	2	0	46	1.14
73618--73661	14	3.1	14	81	12	54	50	0	0	50	1.00
73637--73709	11	5.3	14	70	27	50	43	0	0	56	0.99
73647--73699	23	2.2	25	80	12	58	41	0	0	58	0.98
73663--73734	17	4.4	16	76	19	60	47	0	0	52	1.00
73740--73777	17	2.2	19	81	18	55	50	0	5	44	1.24
73743--73777	18	2.1	16	89	10	52	48	0	5	45	1.26
73774--73837	17	3.6	17	72	6	56	48	0	1	50	1.10
73800--73843	14	3.1	14	80	3	52	45	0	0	54	0.99
73932--74055	42	3.0	39	71	21	92	51	1	3	43	1.27
74048--74475	177	2.4	178	81	3	475	41	9	8	40	1.67
75086--75140	23	2.4	24	87	6	78	47	1	0	50	1.11
75190--75236	16	2.8	17	80	3	51	57	0	2	40	1.11
75414--75823	182	2.3	180	78	5	391	40	9	9	40	1.70
76009--76050	12	3.4	13	80	9	52	35	0	4	59	1.19
76008--76061	25	2.2	25	83	6	65	35	1	5	57	1.33
76008--76061	13	4.3	12	79	6	54	35	1	5	57	1.33
76909--76943	13	2.8	12	87	8	52	42	0	8	48	1.33
76978--77025	15	3.0	15	73	26	53	56	0	6	37	1.25
77298--77371	13	5.4	14	73	12	64	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77308--77356	25	2.0	23	88	7	71	44	0	0	55	0.99
77295--77363	25	3.1	22	73	18	63	43	0	0	56	0.99
77312--77371	25	2.4	25	83	2	68	48	0	0	51	1.00
77418--77491	25	3.0	25	73	19	66	48	1	0	50	1.09
77535--77580	21	2.1	22	84	4	58	58	2	2	36	1.22
78170--78242	17	4.2	17	74	19	62	52	2	2	42	1.30
78195--78234	18	2.2	19	86	13	57	55	0	2	42	1.13
78165--78234	17	4.0	18	78	10	65	51	1	4	42	1.30
78487--78529	12	3.6	12	84	6	52	39	0	0	60	0.97
79583--79614	17	1.9	16	93	6	55	53	0	0	46	1.00
79583--79614	8	3.9	8	95	4	55	53	0	0	46	1.00
79672--79724	24	2.3	22	75	15	52	54	0	3	41	1.18
80113--80557	178	2.5	175	77	9	436	42	9	7	40	1.66
80651--80702	25	2.1	25	85	7	70	51	1	3	42	1.31
80662--80738	25	3.0	25	78	17	70	46	1	2	49	1.23
80800--80854	22	2.4	24	82	11	62	49	3	1	45	1.30
81206--82175	177	5.4	177	76	9	782	41	10	8	40	1.69
83253--83314	12	5.7	11	74	16	58	51	0	0	48	1.00
83273--83328	15	3.9	14	80	17	62	51	0	1	46	1.11
83602--83646	22	2.0	22	82	0	54	42	2	6	48	1.41
83770--83838	11	5.6	13	75	19	51	49	1	4	44	1.31
83857--83894	19	2.0	19	89	0	58	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83830--83895	32	2.0	34	82	5	82	51	0	6	42	1.26
84022--84076	17	3.1	17	75	14	58	49	0	1	49	1.11
84653--85162	178	2.8	179	87	4	672	41	7	9	40	1.67
85658--85688	16	1.9	16	93	0	53	48	0	3	48	1.17
86155--86218	16	4.0	16	70	8	58	50	3	0	46	1.17
86190--86268	34	2.4	34	83	12	101	48	0	2	49	1.14
86511--86604	29	3.4	28	75	18	74	54	2	0	43	1.12
87076--87125	26	1.9	27	88	8	77	58	4	2	36	1.29
87151--87207	23	2.4	24	80	8	64	50	5	1	42	1.35
87833--87878	15	3.5	15	67	32	50	41	4	0	54	1.20

Tables:   1   2   3   4   5   6   7   8