genome.fa.s1737.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold127
Parameters: 2 7 7 80 10 50 1000
Length:  3416254

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3281033--3281186	43	3.6	43	80	12	140	25	20	25	27	1.99
3287806--3287945	41	3.3	42	81	9	160	36	10	0	52	1.40
3294908--3294934	13	2.1	13	100	0	54	29	0	22	48	1.51
3296004--3296161	43	3.7	43	78	8	142	26	17	25	30	1.97
3318949--3318990	22	1.9	22	85	0	57	42	19	23	14	1.87
3319702--3319744	11	3.8	11	80	17	52	67	4	0	27	1.10
3324109--3324135	11	2.5	11	100	0	54	14	0	11	74	1.08
3328820--3328856	19	1.9	19	94	0	65	29	5	5	59	1.42
3330502--3330582	19	4.3	19	73	9	67	23	24	19	32	1.98
3336151--3336569	210	2.0	210	100	0	838	39	15	24	20	1.91
3342574--3342632	30	1.9	31	93	3	102	37	0	44	18	1.50
3342580--3342641	30	2.1	30	84	3	81	41	0	40	17	1.50
3345074--3345102	15	1.9	15	100	0	58	20	31	0	48	1.50
3347056--3347101	22	2.0	23	87	4	67	17	23	21	36	1.94
3347229--3347342	30	3.8	30	82	5	151	28	21	14	35	1.93
3364080--3364483	207	2.0	206	89	1	621	32	20	12	34	1.91
3364472--3364517	22	2.1	22	84	8	58	39	26	0	34	1.57
3365430--3365461	15	2.1	15	94	0	55	15	6	9	68	1.36
3373162--3373276	38	3.0	39	87	2	160	44	12	8	34	1.73
3381575--3381687	51	2.2	51	79	6	122	40	6	17	35	1.75
3388152--3388296	72	2.0	71	97	2	274	26	24	2	46	1.66
3388717--3388821	40	2.7	40	77	4	106	37	19	23	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3388878--3389196	41	7.8	41	80	4	331	16	24	23	35	1.95
3388876--3389196	123	2.6	123	83	4	380	17	24	23	35	1.95
3388877--3389238	123	2.9	123	83	3	336	16	25	23	34	1.95
3391826--3391852	11	2.5	11	100	0	54	25	18	0	55	1.43
3398893--3398945	21	2.5	22	78	9	65	39	5	1	52	1.36
3400538--3400730	87	2.2	87	83	7	239	39	17	30	12	1.87
3400703--3400760	21	2.8	21	81	0	71	36	17	39	6	1.76
3401066--3401341	43	6.4	43	85	5	315	23	21	22	31	1.98
3402080--3402168	27	3.3	27	80	12	110	22	23	31	22	1.98
3402269--3402293	13	1.9	13	100	0	50	72	0	28	0	0.86
3402258--3402283	8	3.2	8	100	0	52	76	0	23	0	0.78
3402409--3402436	3	9.3	3	100	0	56	32	0	0	67	0.91
3403248--3403284	18	2.1	18	94	0	65	16	2	40	40	1.62
3405569--3405593	11	2.3	11	100	0	50	44	16	8	32	1.76
3407783--3408559	321	2.4	318	94	1	1342	29	10	9	50	1.67
3408913--3409041	23	5.4	23	75	15	95	1	30	0	68	0.99
3408929--3409041	4	27.0	4	73	22	58	1	28	0	69	0.98
3408907--3409039	50	2.7	49	82	11	157	1	30	0	67	1.00
3408929--3409041	37	3.1	36	75	17	117	1	28	0	69	0.98
3408914--3409041	10	13.3	10	72	17	69	1	29	0	68	0.99
3409090--3409159	27	2.6	26	80	8	70	22	34	22	20	1.97
3410422--3410447	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3410725--3410750	2	13.0	2	100	0	52	50	0	0	50	1.00
3410249--3410842	303	2.0	303	98	0	1163	35	23	17	23	1.95
3411582--3411624	22	2.0	22	85	0	59	9	11	27	51	1.69
3411701--3412007	42	7.2	42	84	4	354	32	21	20	25	1.98
3411701--3412006	85	3.6	84	83	5	343	32	21	20	25	1.98
3412515--3412580	21	3.1	21	84	0	87	1	42	19	36	1.61

Tables:   1   2   3   4   5   6   7   8   9   10

The End!